| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 99 [0] | [0] 99 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 94 (1.160) | 59/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:3736341/50‑1 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:692062/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:5012035/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:1806327/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:4395055/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:732680/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:4723226/49‑1 GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:1681471/1‑50 GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:3652629/1‑50 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:5225911/1‑49 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:6239669/49‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:3006305/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:5170546/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:4912812/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:1728448/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:5240339/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:3893670/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:3231419/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:6221127/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:373508/50‑1 CCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:5330025/1‑50 CCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:6131895/1‑50 CCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:3372060/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:1855690/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:3284957/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:2309911/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:5448393/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:1928755/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:5652165/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:540209/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:3373854/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:5284329/48‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:703484/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:2128791/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:2132888/49‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:6304482/50‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:4988441/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:4667537/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:4953937/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:2818127/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:2637927/49‑1 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 1:1371173/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC < 1:1030157/49‑1 TCCTAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT < 1:6405788/49‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:5620581/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:2505879/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT < 1:2928480/49‑1 CCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG > 1:6125837/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:1246152/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:111253/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:2018140/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:1185901/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:5752580/1‑50 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:6296777/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:6112653/1‑50 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:5169998/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:6120435/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:2753634/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:3079069/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:2534548/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:2724968/1‑49 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:5597901/1‑50 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:5212070/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:1738713/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:5906167/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:6163296/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:1547307/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:3502201/50‑1 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4894475/1‑50 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2316822/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4315483/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:3065085/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:621224/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:530547/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:3673137/50‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:1001425/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:1753898/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:1821501/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:3466397/48‑1 TGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT > 1:1422044/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT < 1:6295263/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:3440467/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:2139310/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:5115255/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:2581111/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:2874310/50‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:3989982/50‑1 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:1513548/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:435354/1‑49 TATTTCACCACTCATTGCCTCATTCCTTGTGTATAGCCAGCCATTTTTT < 1:1995395/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:4905941/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA < 1:4916712/50‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:6138150/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:2077805/49‑1 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:145085/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:4531563/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1587680/49‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1481841/49‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:3747790/49‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |