| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 91 [0] | [0] 93 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 87 (1.090) | 52/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994941‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAA > NC_000913/2998869‑2998917 GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:3416892/1‑50GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC < 1:1171698/50‑1 CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:4950399/1‑49 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA > 1:4339572/1‑50 GTAGATTTGCTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCAC > 1:4531020/1‑50 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT > 1:113105/1‑50 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT > 1:4570457/1‑50 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCAC < 1:2528764/49‑1 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA < 1:3530145/48‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA < 1:862470/50‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA > 1:2790633/1‑50 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA < 1:4097060/50‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:901891/49‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:2672763/49‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT < 1:3425860/50‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT < 1:920329/50‑1 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTT < 1:2832456/49‑1 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTT < 1:1903525/49‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC < 1:2291153/50‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC < 1:5731132/50‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAA < 1:2497710/49‑1 TACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC > 1:5898386/1‑49 ACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACA < 1:1055553/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC > 1:1333149/1‑50 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT < 1:1617043/50‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT > 1:4457083/1‑50 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT > 1:665524/1‑50 CCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG > 1:1530467/1‑49 CCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG > 1:2056394/1‑49 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAA < 1:1149482/50‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAA < 1:5576370/50‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA > 1:794464/1‑49 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA < 1:397266/49‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA > 1:4246391/1‑49 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA < 1:1495689/49‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA > 1:1633298/1‑49 GCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAA < 1:4479415/50‑1 CTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA < 1:3312711/50‑1 TATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:5889306/1‑49 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:4742061/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:4799595/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:3864420/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAAT > 1:1231922/1‑48 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAAT < 1:3837995/48‑1 AGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAG > 1:5681860/1‑50 TTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:4339184/1‑50 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT > 1:4217056/1‑50 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:983256/49‑1 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:6086356/49‑1 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG < 1:2530482/48‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT < 1:2862586/49‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT < 1:3981906/49‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT < 1:6001898/49‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT < 1:2782124/49‑1 TTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT > 1:876367/1‑49 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:3854715/49‑1 ATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG > 1:3067743/1‑50 TCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG > 1:1453426/1‑50 TCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG > 1:916165/1‑50 TCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG > 1:2589867/1‑50 TCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG > 1:2552235/1‑50 CTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG > 1:892641/1‑50 CTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG > 1:4067092/1‑50 CTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG > 1:2892173/1‑50 TTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGT > 1:2454114/1‑50 TTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGT > 1:479837/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG > 1:1331355/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG > 1:394132/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGT < 1:3731009/48‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGT < 1:5896822/48‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGT < 1:4360806/48‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG < 1:1796811/47‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG < 1:771408/47‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG < 1:4769253/46‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:5044956/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:1453606/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:2032139/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:6403432/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTT < 1:5670541/40‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTT < 1:4966333/40‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTT < 1:5959885/40‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT < 1:5194604/39‑1 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT > 1:5518488/1‑50 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTT < 1:1334799/50‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT < 1:410163/49‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT < 1:1231914/49‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAC < 1:14155/50‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAC < 1:3738890/50‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA < 1:2783539/49‑1 CCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA < 1:975213/50‑1 CCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA > 1:184014/1‑49 CCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA > 1:2020757/1‑49 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAA < 1:1296575/50‑1 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > 1:1640925/1‑49 GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994941‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAA > NC_000913/2998869‑2998917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |