Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 63 [0] [0] 62 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)53 (0.680) 36/92 0.3 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453878‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902
                                                                                                   
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:907524/50‑1
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:1574737/50‑1
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:1141089/50‑1
 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT                                                  <  1:3953326/50‑1
 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT                                                  <  1:308607/50‑1
 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   >  1:601741/1‑49
  GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 <  1:772823/50‑1
  GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 <  1:1593621/50‑1
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              <  1:5254259/50‑1
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA                                               <  1:2982359/49‑1
       CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                            <  1:4370265/50‑1
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         >  1:1060859/1‑50
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         <  1:4354474/50‑1
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                          <  1:3953366/49‑1
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                          <  1:590420/49‑1
          TTTCTTCCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                          <  1:610462/49‑1
            TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:3294929/49‑1
            TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:441894/49‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                     <  1:5978945/48‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:3051563/47‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:111727/47‑1
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                  <  1:1286907/47‑1
                     TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA                               >  1:5696971/1‑49
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            >  1:4144867/1‑50
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                             <  1:3977526/49‑1
                          CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                         <  1:3142760/50‑1
                           GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC                        <  1:2910578/50‑1
                           GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                         >  1:1050523/1‑49
                           GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                         >  1:404620/1‑49
                              GCGATATAGAATTCAAACATTATAATCCATTGTGACGTAAAAACTGCAA                      >  1:4655551/1‑49
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:5635234/1‑50
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    <  1:1191926/50‑1
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:5713017/1‑50
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:3534125/1‑50
                                GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   <  1:2447278/50‑1
                                  TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                  >  1:199020/1‑49
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:2174146/50‑1
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:39650/1‑48
                                      GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT             >  1:391493/1‑50
                                       AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            >  1:5218719/1‑50
                                         TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT          <  1:3176938/50‑1
                                         TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT          <  1:516604/50‑1
                                         TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC           >  1:3665999/1‑49
                                          TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         >  1:2369694/1‑50
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:6225025/1‑50
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:2801295/49‑1
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:2969450/49‑1
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:2351590/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:6203922/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:5278705/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:1008200/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:5166196/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:3279799/49‑1
                                             AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC      <  1:620503/50‑1
                                              ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA     <  1:5527372/50‑1
                                              ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA     <  1:5809362/50‑1
                                              ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA     <  1:3734107/50‑1
                                               CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:4003220/50‑1
                                                ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    >  1:5410694/1‑49
                                                 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:5503543/50‑1
                                                 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:1636506/50‑1
                                                 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:1474025/50‑1
                                                 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG   >  1:1170858/1‑49
                                                                                                   
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453878‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.