| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,593,299 | Δ10 bp | coding (130‑139/714 nt) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 14 (0.170) | 52 (0.630) | 35/98 | 0.5 | 80.0% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 12 (0.140) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593252‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC > 1:1189906/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:6305365/50‑1 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:2985740/50‑1 CGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC < 1:248081/49‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:5321249/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:5964234/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:2722640/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCC < 1:557626/49‑1 CCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCC < 1:4182143/50‑1 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:2711536/1‑50 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:275159/1‑50 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:2452122/1‑50 CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGT > 1:2948348/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:6261439/1‑50 CTGGTGGCGCGCGGATCGCCGCATAGCGTGACGAGCACCCCGCCCCGTTC < 1:4210674/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 1:2875769/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 1:57666/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 1:3029681/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC > 1:3778145/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGC < 1:3910/49‑1 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:2594288/1‑50 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:1053749/1‑50 CGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:102697/1‑49 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:3010142/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:541944/1‑50 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:6086201/1‑49 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:5507868/1‑49 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:327604/1‑50 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:1047999/1‑50 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:5408483/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:3210363/1‑50 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC > 1:1303227/1‑50 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC > 1:5639001/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT < 1:5396471/50‑1 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT > 1:1800734/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT > 1:5398109/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT > 1:4525526/1‑50 TAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC < 1:2435694/50‑1 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC < 1:4932179/50‑1 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG < 1:5690067/49‑1 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG < 1:3167571/49‑1 CGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC < 1:3139068/50‑1 GTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCC > 1:4309318/1‑50 TGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT < 1:4014097/50‑1 GCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT > 1:4683142/1‑49 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTG < 1:4813416/49‑1 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTG < 1:3850169/49‑1 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT < 1:589887/50‑1 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT > 1:798752/1‑50 GCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:3652148/1‑50 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:1022417/1‑49 ACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > 1:504822/1‑50 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593252‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |