| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 16 (0.190) | 78 (0.980) | 57/94 | 0.0 | 82.4% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 18 (0.230) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400241‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:4480278/50‑1 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:3557389/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:4254270/50‑1 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:2719429/1‑50 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG < 1:1401380/50‑1 TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:4294905/1‑49 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4232657/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:2811969/50‑1 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4184650/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCA < 1:2759497/49‑1 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:1766742/1‑50 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:3854785/50‑1 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:4421181/1‑50 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1131224/1‑50 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:3160222/1‑49 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:5430736/1‑49 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:5261430/50‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA < 1:3232550/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA < 1:590362/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:1648996/1‑48 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:4902362/1‑48 AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:870929/1‑46 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT < 1:2310653/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:122878/1‑45 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:435656/1‑45 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:1443890/1‑45 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:5917299/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:2420003/50‑1 ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:5320606/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:2953737/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3384236/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC < 1:275434/49‑1 AAATACGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT > 1:4459055/1‑50 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT < 1:1571492/50‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT < 1:3265610/50‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:4055158/1‑50 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC > 1:1241932/1‑50 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:5823686/1‑50 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:5785575/1‑49 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT < 1:2076265/49‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:2221507/1‑49 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:3340936/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC > 1:878920/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC > 1:1097520/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:4591321/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:3326633/1‑50 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG < 1:4565165/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG < 1:4253769/50‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:6360876/1‑50 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:1107826/1‑49 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:5004096/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:3888404/1‑50 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC < 1:936755/49‑1 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 1:1253781/1‑50 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:1913910/50‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG < 1:5179709/50‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:564107/1‑50 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:505133/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 1:4730390/50‑1 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 1:970595/50‑1 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC < 1:6155916/50‑1 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT < 1:4534103/50‑1 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT > 1:2859846/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:6209880/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:5836663/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:5520491/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:2020501/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:5613860/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:1011201/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:3514932/1‑50 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG < 1:4552444/50‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2696831/1‑49 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG > 1:1022442/1‑49 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:4135085/1‑50 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA < 1:3698372/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:5369353/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:1106618/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:980368/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG < 1:5769741/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:4937245/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:6424274/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:3386869/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:3932564/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:2291441/48‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400241‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |