| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 98 [0] | [0] 99 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 96 (1.180) | 60/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549712‑4549759 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:1742593/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:5720000/1‑49 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:3447569/1‑49 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:4782714/1‑50 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA < 1:3311183/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 1:3247200/49‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:1516192/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:6062463/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:1201260/50‑1 TTTCCGGTTCGATAATGATTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:4726885/50‑1 TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:400120/1‑49 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:832504/49‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:4972702/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:5082169/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:1357331/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:4156603/1‑49 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:1404950/49‑1 CGGTTCGATAATGCTTATACCAACAGGGAGGGAATACGAGAAATCACAG > 1:4066326/1‑49 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:684709/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:4715253/50‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:4756228/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:4010199/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:1167158/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:1629164/50‑1 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 1:5845082/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:5781724/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:5811878/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:1841960/50‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:1306910/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:1021352/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:2118661/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:480800/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:1054528/1‑50 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:3874479/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:526509/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:5804413/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:1553326/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:646429/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:2577173/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:5854460/1‑50 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 1:3794928/1‑50 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:1656185/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:1641854/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:2646544/50‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:3240092/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:6023272/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:2482031/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:102454/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:2850616/49‑1 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT > 1:2999544/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:3438955/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:3546816/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:2136938/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:5154995/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:5219715/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:189506/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:6123074/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:3866828/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:5725492/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:1944107/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:5570686/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:5171714/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC < 1:2318839/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:739640/1‑49 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:1110964/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 1:4211047/1‑49 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:1647081/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:5412878/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:1516433/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:1666507/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:699552/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:4613742/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:1454173/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:2974862/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:3776077/1‑50 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:4776405/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:1643311/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:5970173/1‑50 GGGAATACGAGAAATCACAGGTCATTGCTAATGCTGGTACGCAATATTAC < 1:1253432/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:4565401/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:3416157/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:5885248/1‑50 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC > 1:1195417/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:2608804/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:3113193/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:6287654/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:1310390/1‑50 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:4092992/1‑49 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:1080562/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:5895925/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:3029296/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:6408518/1‑50 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2285248/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2219542/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2109175/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGAACGCAATATTACCTGAAGC > 1:3206209/1‑49 AGAAATCACAGTACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 1:1705222/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 1:3469112/1‑49 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549712‑4549759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |