mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,287 | 0 | G | C | 38.1% | 31.5 / 10.0 | 21 | intergenic (+93/+136) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 599,576 | 0 | T | G | 37.0% | 95.9 / 16.4 | 54 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 888,014 | 0 | T | G | 34.6% | 95.3 / 13.1 | 52 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 4,070,462 | 0 | T | C | 34.6% | 51.9 / 54.1 | 52 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 1,811,933 | 0 | G | C | 33.9% | 101.5 / 67.4 | 62 | A334P (GCC→CCC) | tcyP | cystine/sulfocysteine:cation symporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.8% | 223.5 / 186.0 | 171 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,097,467 | 0 | T | G | 31.0% | 121.6 / 21.4 | 58 | G67G (GGT→GGG) | yggW | putative coproporphyrinogen‑III oxidase‑like protein YggW |
| * | NC_000913 | 1,911,750 | 0 | T | G | 30.2% | 118.5 / 10.9 | 53 | H276P (CAC→CCC) | htpX | zinc dependent endoprotease |
| * | NC_000913 | 3,829,233 | 0 | C | A | 28.3% | 139.5 / 45.4 | 60 | L97M (CTG→ATG) | xanP | xanthine:H(+) symporter XanP |
| * | NC_000913 | 3,556,207 | 0 | T | C | 25.0% | 112.3 / 12.1 | 48 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 2,892,195 | 0 | A | T | 24.4% | 106.9 / 14.8 | 45 | intergenic (‑297/‑19) | cysJ/queD | sulfite reductase, flavoprotein subunit/6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| * | NC_000913 | 213,341 | 0 | A | G | 24.1% | 128.4 / 13.8 | 54 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 3,862,661 | 0 | T | G | 23.9% | 155.3 / 24.6 | 72 | T315P (ACC→CCC) | glvC | putative PTS enzyme II component GlvC |
| * | NC_000913 | 4,457,105 | 0 | A | G | 23.8% | 152.9 / 15.7 | 63 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 73,413 | 0 | A | C | 23.4% | 102.0 / 12.6 | 47 | V370G (GTG→GGG) | thiP | thiamine ABC transporter membrane subunit |
| * | NC_000913 | 3,850,891 | 0 | G | A | 23.3% | 191.1 / 58.8 | 86 | Q68* (CAA→TAA) | ilvN | acetohydroxy acid synthase I subunit IlvN |
| * | NC_000913 | 3,342,888 | 0 | T | G | 23.1% | 138.5 / 14.6 | 52 | V18G (GTG→GGG) | lptC | lipopolysaccharide transport system protein LptC |
| * | NC_000913 | 176,274 | 0 | G | T | 22.6% | 131.8 / 12.2 | 53 | A390S (GCT→TCT) | clcA | chloride:H(+) antiporter ClcA |
| * | NC_000913 | 2,483,268 | 0 | T | A | 22.4% | 130.1 / 12.0 | 49 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 2,185,199 | 0 | T | G | 21.8% | 229.0 / 17.6 | 80 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 58 (0.700) | 16 (0.210) | 15/92 | 3.5 | 22.8% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 54 (0.690) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
| * | ? | NC_000913 | = 3256322 | 83 (1.000) | 3 (0.050) | 3/76 | 7.9 | 4.7% | coding (330/1311 nt) | cyuA | putative L‑cysteine desulfidase CyuA |
| ? | NC_000913 | 3256551 = | 58 (0.910) | coding (101/1311 nt) | cyuA | putative L‑cysteine desulfidase CyuA | |||||