| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,090,341 | Δ1 bp | intergenic (+89/‑6) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,341 | 0 | T | . | 98.3% | 288.1 / ‑1.5 | 60 | intergenic (+89/‑6) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base . (31/28); total (31/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC > NC_000913/3090295‑3090385 | tACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTagt < 1:1828665/50‑3 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:4911777‑M1/50‑2 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:396796‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:965067‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:5316815‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:3836861‑M1/1‑48 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:3757895‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:4658577‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:3408019‑M1/1‑47 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:43535‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:5022048‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:4657353‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:4969641‑M1/1‑43 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:198720‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:3938693‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3662200‑M1/1‑42 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3159688‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:5249048‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:663016‑M1/1‑41 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:5359298‑M1/1‑40 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:501795‑M1/1‑39 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:1955465‑M1/1‑39 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:3361247‑M1/1‑37 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:2747638‑M1/49‑14 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2746159‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:31519‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:1812375‑M1/49‑15 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:2159592‑M1/49‑15 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:4253819‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:3011685‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:871292‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:4036884‑M1/1‑31 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:3673905‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:4521774‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:1942158‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:581942‑M1/50‑22 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:1078937‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:2553178‑M1/1‑28 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:2473787‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:3969669‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:917800‑M1/1‑24 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:4576226‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:1793412‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:3931763‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:3409142‑M1/49‑27 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:4845718‑M1/1‑22 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:244182‑M1/1‑21 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:5534915‑M1/1‑20 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:3677831‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc < 1:950213‑M1/50‑32 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2271233‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2161164‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2634065‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:334095‑M1/49‑34 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:1774607‑M1/1‑14 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc < 1:1910793‑M1/50‑38 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:4957035‑M1/49‑37 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:1341532‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:5385508‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:1112157‑M1/1‑11 (MQ=255) | TACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC > NC_000913/3090295‑3090385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |