| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 83 [0] | [0] 83 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 83 (1.140) | 56/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819728‑819823 | aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:1112249‑M1/1‑48 (MQ=255)aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:2935297‑M1/50‑3 (MQ=255)aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:2593447‑M1/50‑3 (MQ=255)aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:2384314‑M1/1‑48 (MQ=255) ggcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg < 1:3619233‑M1/50‑4 (MQ=255) ggcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg < 1:689272‑M1/50‑4 (MQ=255) cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa < 1:2285169‑M1/50‑6 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag > 1:4945058‑M1/1‑44 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:4977289‑M1/50‑7 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag > 1:5005777‑M1/1‑44 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag > 1:2884824‑M1/1‑44 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:2146300‑M1/50‑7 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:4394480‑M1/50‑8 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:34070‑M1/1‑43 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg < 1:1909914‑M1/50‑9 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:4280631‑M1/1‑42 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:1796749‑M1/1‑42 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:881645‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:3570772‑M1/1‑41 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:5393992‑M1/50‑11 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:703707‑M1/50‑13 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 1:3641096‑M1/1‑37 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc > 1:338597‑M1/1‑36 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc > 1:4983372‑M1/1‑36 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:3940905‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:95029‑M1/1‑35 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:4101078‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:4834957‑M1/1‑34 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa < 1:4129657‑M1/50‑19 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:1454216‑M1/1‑32 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:2141439‑M1/49‑18 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:952848‑M1/49‑18 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc < 1:922927‑M1/48‑17 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:1579366‑M1/1‑31 (MQ=255) aGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata > 1:548314‑M1/1‑30 (MQ=255) aGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata > 1:2176721‑M1/1‑30 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata < 1:3446147‑M1/49‑21 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:5106575‑M1/1‑28 (MQ=255) tttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:2330504‑M1/1‑27 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta < 1:1940867‑M1/49‑24 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta < 1:3548711‑M1/49‑24 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:1694781‑M1/1‑26 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:4502369‑M1/1‑25 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:1633851‑M1/1‑25 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:2706635‑M1/1‑25 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:3499733‑M1/49‑27 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:2706885‑M1/49‑27 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:176771‑M1/1‑22 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:95172‑M1/1‑22 (MQ=255) ttAGCCGGATAAGGCCCCGCTttgaagcgagccgctcaatactacacttt < 1:1059614‑M1/50‑30 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt < 1:883494‑M1/49‑31 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:1466529‑M1/1‑19 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttt < 1:3681722‑M1/49‑32 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttt < 1:3896693‑M1/49‑32 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:335662‑M1/1‑18 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:5128124‑M1/50‑34 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:4429516‑M1/50‑34 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:1331083‑M1/1‑17 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:5465239‑M1/1‑17 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:3564933‑M1/1‑16 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca < 1:1346706‑M1/50‑36 (MQ=255) gATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:2606838‑M1/1‑14 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcaga < 1:1760796‑M1/50‑38 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:2565404‑M1/1‑13 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:2860374‑M1/50‑39 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:2980234‑M1/1‑11 (MQ=255) atgcaCCGCTttgaagcgagccgctcaatactacactttttagca > 1:5175328‑M1/3‑10 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:4867352‑M1/1‑10 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagat > 1:1170362‑M1/1‑9 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagat > 1:623486‑M1/1‑9 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 1:985574‑M1/50‑43 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 1:4704881‑M1/50‑43 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag < 1:2652675‑M1/50‑44 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag > 1:4615781‑M1/1‑7 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag < 1:4821262‑M1/50‑44 (MQ=255) cACCGCTttcaagcgagccgctcaatactacactttttagcagagatcag > 1:672110‑M1/1‑7 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt < 1:3234198‑M1/50‑45 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca > 1:5160147‑M1/1‑4 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca > 1:2382276‑M1/1‑4 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca > 1:935069‑M1/1‑4 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca < 1:404291‑M1/50‑47 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac > 1:2394576‑M1/1‑3 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:2059792‑M1/1‑2 (MQ=255) | AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819728‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |