| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 69 [0] | [0] 69 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 61 (1.010) | 42/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 | cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:5286520‑M1/1‑50 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaat > 1:3475573‑M1/1‑45 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg < 1:691836‑M1/50‑7 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg > 1:5231889‑M1/1‑44 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc < 1:1114548‑M1/50‑8 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:2442516‑M1/1‑41 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:5398418‑M1/1‑41 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:5314160‑M1/1‑41 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:1716541‑M1/1‑41 (MQ=255) cAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgag < 1:1608427‑M1/50‑11 (MQ=255) cAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgag > 1:3523418‑M1/1‑40 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:3517412‑M1/1‑39 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtg < 1:4711464‑M1/50‑13 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:2720075‑M1/1‑38 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:5560169‑M1/1‑38 (MQ=255) tgtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtga > 1:1596752‑M1/1‑37 (MQ=255) gtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgat > 1:91540‑M1/1‑36 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt > 1:516204‑M1/1‑35 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgat < 1:1855337‑M1/49‑15 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:5169727‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:4470037‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:113384‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 1:3106368‑M1/1‑33 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCGCAGGAAGgaaatgcgagtgattt < 1:4201294‑M1/49‑17 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:3020061‑M1/50‑19 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:5497586‑M1/50‑19 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:1677776‑M1/50‑19 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc > 1:5234007‑M1/1‑30 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc > 1:643782‑M1/1‑30 (MQ=255) ttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg > 1:4346071‑M1/1‑29 (MQ=255) ttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg > 1:1468311‑M1/1‑29 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg < 1:4924215‑M1/49‑22 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:1774947‑M1/48‑21 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:1689855‑M1/48‑21 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcac < 1:2758386‑M1/47‑20 (MQ=255) aGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgt < 1:3594598‑M1/49‑23 (MQ=255) aGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgt < 1:2301332‑M1/49‑23 (MQ=255) ttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc > 1:2060101‑M1/1‑24 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg > 1:2678356‑M1/1‑23 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 1:5384554‑M1/49‑27 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 1:1909223‑M1/49‑27 (MQ=255) cATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg > 1:3354534‑M1/1‑22 (MQ=255) cATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg < 1:2663679‑M1/49‑28 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg < 1:2696858‑M1/49‑29 (MQ=255) tAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggca > 1:802159‑M1/1‑20 (MQ=255) tAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggca < 1:2084689‑M1/50‑31 (MQ=255) aaGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggca > 1:3008807‑M1/1‑19 (MQ=255) aaGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggca > 1:2013731‑M1/1‑19 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa > 1:1336848‑M1/1‑17 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa > 1:1295846‑M1/1‑17 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:3208868‑M1/1‑14 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc < 1:4227098‑M1/49‑36 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga < 1:512442‑M1/50‑38 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga < 1:4959868‑M1/50‑38 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga < 1:2156994‑M1/50‑38 (MQ=255) tCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat > 1:5097495‑M1/1‑12 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatc > 1:3258901‑M1/1‑11 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 1:479542‑M1/49‑39 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 1:2529883‑M1/49‑39 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatc < 1:5169641‑M1/49‑40 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatc < 1:3759369‑M1/49‑40 (MQ=255) cTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccg > 1:5281235‑M1/1‑9 (MQ=255) tCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:5117436‑M1/1‑8 (MQ=255) tCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:2140431‑M1/1‑8 (MQ=255) cAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:3269848‑M1/1‑7 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcca < 1:3427000‑M1/50‑45 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcc < 1:334287‑M1/49‑44 (MQ=255) ggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcca > 1:2832295‑M1/1‑5 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaag < 1:4270807‑M1/50‑50 (MQ=255) | CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |