| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 71 [0] | [0] 73 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 71 (0.980) | 42/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090297‑3090395 | ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:4911777‑M1/50‑2 (MQ=255)ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:396796‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:965067‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:3836861‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:5316815‑M1/1‑48 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:4658577‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:3757895‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:3408019‑M1/1‑47 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:5022048‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:4969641‑M1/1‑43 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:4657353‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:43535‑M1/50‑8 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:3938693‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:198720‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3159688‑M1/1‑42 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3662200‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:5249048‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:663016‑M1/1‑41 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:5359298‑M1/1‑40 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:1955465‑M1/1‑39 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:501795‑M1/1‑39 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:3361247‑M1/1‑37 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:2747638‑M1/49‑14 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2746159‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:31519‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:1812375‑M1/49‑15 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:2159592‑M1/49‑15 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:4253819‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:871292‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:4036884‑M1/1‑31 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:3011685‑M1/50‑20 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:4521774‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:3673905‑M1/50‑21 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:581942‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:1942158‑M1/50‑22 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:2553178‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:1078937‑M1/1‑28 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:2473787‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:3969669‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:917800‑M1/1‑24 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:4576226‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:1793412‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:3409142‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:3931763‑M1/49‑27 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:4845718‑M1/1‑22 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:244182‑M1/1‑21 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:3677831‑M1/1‑20 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:5534915‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc < 1:950213‑M1/50‑32 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2161164‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:334095‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2634065‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2271233‑M1/49‑34 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:1774607‑M1/1‑14 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc < 1:1910793‑M1/50‑38 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:4957035‑M1/49‑37 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:1112157‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:5385508‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:1341532‑M1/1‑11 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:3123238‑M1/3‑7 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:2602321‑M1/2‑6 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:562289‑M1/50‑47 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:1747491‑M1/50‑47 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:4546905‑M1/1‑3 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:184690‑M1/1‑3 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:1286262‑M1/1‑3 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa > 1:1231055‑M1/1‑2 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:3668214‑M1/1‑1 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:2798306‑M1/1‑1 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:273482‑M1/1‑1 (MQ=255) gcctacactagcgggattctttttgttaacccctaccccacgcgtacaac > 1:955756‑M1/1‑1 (MQ=255) | CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTT > NC_000913/3090297‑3090395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |