| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 97 [0] | [0] 95 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 94 (1.290) | 59/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:2897570/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:2621780/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:4099508/50‑1 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:3363829‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:2067148‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:4112419‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:253334‑M1/50‑4 (MQ=255) tCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:2671882‑M1/1‑46 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:722980‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:2151890‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:4036285‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:4760303‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:1867831‑M1/49‑6 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:1684937‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:3013731‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:4048615‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:5205085‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:4032220‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat > 1:4027827‑M1/1‑43 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:4241363‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:5246273‑M1/1‑42 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:3889311‑M1/1‑42 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:3772810‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc < 1:490613‑M1/50‑11 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc < 1:1326859‑M1/50‑11 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:3854601‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 1:481437‑M1/50‑12 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:1099207‑M1/50‑13 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:5021770‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:2668160‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:1057035‑M1/49‑15 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:2854301‑M1/49‑15 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:4945636‑M1/1‑35 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:4653028‑M1/1‑35 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:947689‑M1/50‑17 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:611683‑M1/50‑17 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:4373298‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggaca < 1:3231352‑M1/49‑16 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggaca < 1:969453‑M1/49‑16 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:92973‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:4332671‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1498850‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:2454115‑M1/1‑33 (MQ=255) tCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:3770835‑M1/1‑31 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:122543‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:5021607‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:2642805‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:2726102‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:3631690‑M1/49‑21 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:1442188‑M1/49‑21 (MQ=255) tATTTATAACAACATCAGTGAATACtaacaatgccggacaggagtactat < 1:4045005‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:3512502‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta < 1:654295‑M1/49‑25 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:1432174‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:2107606‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:2617641‑M1/49‑27 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:143093‑M1/1‑21 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:4277084‑M1/49‑29 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:2039610‑M1/1‑20 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:4598627‑M1/49‑30 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:1738454‑M1/49‑30 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca < 1:1611744‑M1/50‑32 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:4097870‑M1/49‑31 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:1497123‑M1/1‑18 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:1578108‑M1/1‑18 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:1021409‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:3651644‑M1/50‑34 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:4741168‑M1/50‑35 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:765493‑M1/1‑15 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:921932‑M1/1‑15 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:3922195‑M1/1‑15 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:1116428‑M1/50‑37 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt > 1:3624856‑M1/1‑14 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:155679‑M1/50‑38 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:5151234‑M1/50‑38 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:1466897‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:910931‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:3163575‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt < 1:5436736‑M1/50‑39 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:2993295‑M1/1‑11 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:4733241‑M1/1‑10 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:2612559‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:1937562‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:865355‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:4588993‑M1/50‑44 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:1395370‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:3804333‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:2529017‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:4829633‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:1873595‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:2880254‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:5073610‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:2166609‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:5552838‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:678746‑M1/50‑48 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:588561‑M1/1‑2 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:1268923‑M1/49‑49 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |