| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 76 [0] | [0] 75 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 73 (1.030) | 45/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
TTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770566‑770662 | gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:3115413‑M2/48‑50 (MQ=255)gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:5450567‑M2/48‑50 (MQ=255)gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:2599811‑M2/3‑1 (MQ=255)gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:4046313‑M2/3‑1 (MQ=255)gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:4358929‑M2/48‑50 (MQ=255)gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:1917421‑M2/48‑50 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:2913195‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:4778865‑M2/47‑49 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:5243260‑M2/5‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa < 1:2001335‑M2/6‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa < 1:2481597‑M2/6‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:4164400‑M2/8‑1 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa < 1:3209115‑M2/9‑1 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa < 1:5349073‑M2/9‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 1:4704179‑M2/11‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:2749404‑M2/39‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:47504‑M2/38‑50 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:3142882‑M2/35‑48 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGaa < 1:522007‑M2/16‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg > 1:3784347‑M2/34‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:2658855‑M2/33‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:2734034‑M2/33‑50 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:2683324‑M2/19‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:678448‑M2/19‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:2874113‑M2/19‑1 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:5315378‑M2/31‑50 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:544043‑M2/31‑50 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:1841516‑M2/31‑50 (MQ=255) atcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:4059076‑M2/30‑49 (MQ=255) atcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:4415308‑M2/30‑49 (MQ=255) atcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:1081729‑M2/30‑49 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:4505785‑M2/29‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca < 1:1509033‑M2/20‑1 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:4313094‑M2/28‑49 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:3238584‑M2/28‑49 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:1885690‑M2/27‑50 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata < 1:4145941‑M2/24‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACat < 1:167757‑M2/23‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACat < 1:2036270‑M2/23‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:1533574‑M2/26‑50 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg < 1:3838335‑M2/26‑1 (MQ=255) ggtaaattatagtcatcggtattaTAGAAATCAAACCGAAGCCACATATg < 1:4629359‑M2/26‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:3576397‑M2/24‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgcgc < 1:4855968‑M2/29‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:3400451‑M2/20‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg < 1:2806843‑M2/31‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg < 1:4181375‑M2/31‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg < 1:1485110‑M2/31‑1 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1036718‑M2/18‑49 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1098893‑M2/17‑48 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:3415904‑M2/17‑48 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa < 1:1129566‑M2/34‑1 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:2235791‑M2/15‑46 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt > 1:5339989‑M2/14‑50 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt < 1:2562029‑M2/37‑1 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt < 1:26784‑M2/38‑1 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt > 1:3039087‑M2/13‑50 (MQ=255) catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg > 1:3279293‑M2/12‑50 (MQ=255) catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg > 1:5519025‑M2/12‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt > 1:4479967‑M2/11‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt < 1:3526913‑M2/40‑1 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt < 1:1582630‑M2/40‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:63308‑M2/10‑50 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:492914‑M2/9‑49 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:2214421‑M2/9‑49 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:3381842‑M2/8‑50 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:2782544‑M2/7‑49 (MQ=255) tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc > 1:3983986‑M2/6‑49 (MQ=255) tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc > 1:2898071‑M2/6‑49 (MQ=255) attaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:2345266‑M2/5‑49 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:2679572‑M2/4‑48 (MQ=255) taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg > 1:4952431‑M2/3‑50 (MQ=255) taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg > 1:1706328‑M2/3‑50 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:508515/50‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:585251/50‑1 (MQ=255) | TTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770566‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |