| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 88 [0] | [0] 87 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 86 (1.210) | 54/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873418‑1873516 | ggccgcaatcgaactttatctggttttctcgtttcactaaccgaaggaga < 1:1447464‑M2/1‑1 (MQ=255) gccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagAt < 1:4254508‑M2/2‑1 (MQ=255) gccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagAt < 1:271292‑M2/2‑1 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg < 1:1091903‑M2/3‑1 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg > 1:5433378‑M2/48‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc < 1:557919‑M2/4‑1 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc < 1:2682401‑M2/4‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:2616007‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:4500443‑M2/5‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:3196944‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:2764277‑M2/46‑50 (MQ=255) caatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:3905799‑M2/45‑49 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:2379672‑M2/44‑50 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta < 1:477077‑M2/7‑1 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:2635620‑M2/44‑50 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:5166144‑M2/8‑1 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata < 1:903133‑M2/9‑1 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata < 1:3208463‑M2/9‑1 (MQ=255) cgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:3787111‑M2/41‑49 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:4382909‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:1841961‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:2672123‑M2/10‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:3710594‑M2/10‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:3123624‑M2/10‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 1:3277514‑M2/39‑50 (MQ=255) actttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGc < 1:3278952‑M2/13‑1 (MQ=255) actttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGc < 1:1264079‑M2/13‑1 (MQ=255) ctttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCt < 1:3668804‑M2/14‑1 (MQ=255) tttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt > 1:2915348‑M2/36‑50 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc < 1:643423‑M2/16‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:3285559‑M2/17‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCg < 1:3704703‑M2/18‑1 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:4256610‑M2/31‑50 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:5185077‑M2/31‑50 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:3307786‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:5266086‑M2/22‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:1054564‑M2/22‑1 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc > 1:3941859‑M2/27‑50 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:3288762‑M2/26‑50 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:1002246‑M2/26‑50 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:4840513‑M2/26‑50 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:4896621‑M2/26‑50 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt > 1:1021607‑M2/25‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:3347826‑M2/24‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:1451681‑M2/24‑50 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt < 1:842318‑M2/27‑1 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt < 1:842183‑M2/27‑1 (MQ=255) cgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:1363322‑M2/21‑49 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtata < 1:1132889‑M2/31‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtat < 1:2380564‑M2/30‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 1:4889246‑M2/19‑50 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:5366653‑M2/32‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 1:2405295‑M2/19‑50 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 1:1267485‑M2/19‑50 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 1:3976676‑M2/19‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:975116‑M2/17‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:4955737‑M2/17‑50 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt < 1:1357038‑M2/34‑1 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:2388486‑M2/15‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:3774520‑M2/15‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCa < 1:2623321‑M2/36‑1 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:2835128‑M2/14‑50 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:2974360‑M2/37‑1 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:805296‑M2/13‑49 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:4390272‑M2/13‑49 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:3549562‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:1610091‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 1:3403310‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 1:3465352‑M2/39‑1 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg < 1:1394668‑M2/41‑1 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGc < 1:3541262‑M2/42‑1 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCa < 1:362684‑M2/43‑1 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCa < 1:406744‑M2/43‑1 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCa < 1:2201131‑M2/43‑1 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg < 1:3584822‑M2/44‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 1:5504943‑M2/6‑49 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 1:1639989‑M2/6‑49 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:5374033‑M2/45‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:4399570‑M2/45‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:806564‑M2/45‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:1367188‑M2/45‑1 (MQ=255) ggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa < 1:2046934‑M2/46‑1 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAc > 1:4288478‑M2/3‑49 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAc > 1:5164180‑M2/3‑49 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAc > 1:1701814‑M2/3‑49 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:2867301‑M2/48‑1 (MQ=255) atgCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaaa < 1:1211334/50‑1 (MQ=255) | GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873418‑1873516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |