| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 72 [0] | [0] 70 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 68 (0.940) | 52/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
TGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325119‑4325214 | cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:2798897‑M2/48‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:3588283‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:4442954‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:3486690‑M2/47‑50 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGc < 1:4002206‑M2/5‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:2920127‑M2/6‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 1:5550074‑M2/43‑50 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 1:2351006‑M2/43‑50 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 1:2486424‑M2/9‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:5297951‑M2/42‑50 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:4827331‑M2/41‑50 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:5316181‑M2/41‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:5487643‑M2/40‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:4115245‑M2/12‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:675760‑M2/38‑50 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:23497‑M2/38‑50 (MQ=255) ctgagacccgccgcccagcgctttcatcaactgaatgGATGCAGCCTccc > 1:5351458‑M2/38‑50 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:3737297‑M2/37‑49 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:4772004‑M2/37‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaa < 1:4303351‑M2/16‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:4048301‑M2/15‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCATCCCt < 1:1875822‑M2/14‑1 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa < 1:4248155‑M2/18‑1 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa > 1:4018147‑M2/32‑49 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:4997297‑M2/20‑1 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:3517158‑M2/20‑1 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg > 1:1399255‑M2/30‑50 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg < 1:3765180‑M2/23‑1 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:3651218‑M2/28‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg < 1:2391621‑M2/24‑1 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc > 1:5169494‑M2/26‑50 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 1:2979664‑M2/25‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:1446197‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:2974622‑M2/27‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:2203400‑M2/28‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:5250321‑M2/23‑49 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:530185‑M2/29‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:685679‑M2/30‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt > 1:137431‑M2/21‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:2621233‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:3352945‑M2/20‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:1596908‑M2/19‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:1144733‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:3519823‑M2/33‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:4509949‑M2/33‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:332698‑M2/18‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:1394064‑M2/34‑1 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:2346198‑M2/16‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc > 1:931540‑M2/15‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc > 1:4574439‑M2/15‑50 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCgg < 1:4535743‑M2/38‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:4530812‑M2/13‑49 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:2602228‑M2/37‑1 (MQ=255) tcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGa > 1:4075550‑M2/12‑50 (MQ=255) caactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:4791837‑M2/11‑50 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:3353759‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:538637‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:2388732‑M2/40‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:3546861‑M2/10‑49 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:369535‑M2/10‑49 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:475431‑M2/40‑1 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta > 1:4479791‑M2/9‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:5010690‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:2030711‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:5359338‑M2/43‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:2138543‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:5124589‑M2/5‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:174210‑M2/46‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:4615322/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:4772558/49‑1 (MQ=255) | TGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325119‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |