| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 101 [0] | [0] 104 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 99 (1.390) | 64/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 104 total aligned reads displayed.
GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 | atggtatttccggttcgataatgcttgtaccaacagggagggaatacgag < 1:2145445‑M2/1‑1 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:1030252‑M2/48‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:3545453‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 1:3982746‑M2/4‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:4413759‑M2/5‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:2233331‑M2/5‑1 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:3307018‑M2/45‑49 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:4619890‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:3833025‑M2/44‑50 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcac < 1:2046591‑M2/8‑1 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:4804939‑M2/42‑48 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:3470496‑M2/9‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:5568121‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:1639360‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:4500828‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:1085267‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:4091985‑M2/40‑49 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:4660264‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:5382479‑M2/40‑49 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:182496‑M2/39‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:1140753‑M2/12‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:3837982‑M2/39‑50 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:1891056‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:2450930‑M2/13‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:5120403‑M2/13‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:5524526‑M2/13‑1 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:1835256‑M2/14‑1 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:1805426‑M2/14‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:414846‑M2/35‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:115473‑M2/34‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:1374496‑M2/33‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc < 1:4916046‑M2/18‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:3962172‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:1768286‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:1177560‑M2/19‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:3977504‑M2/19‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:1937118‑M2/31‑49 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:4554417‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:1807027‑M2/29‑50 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:4451425‑M2/29‑50 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:2537458‑M2/22‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:3124096‑M2/28‑50 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:4978082‑M2/28‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGc < 1:3814690‑M2/24‑1 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGc > 1:4748171‑M2/27‑50 (MQ=255) ttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt > 1:1990400‑M2/26‑50 (MQ=255) tgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:4910011‑M2/25‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:101954‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:2791781‑M2/26‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:5399681‑M2/26‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:1379629‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:2224513‑M2/23‑49 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:3682291‑M2/22‑50 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:3256466‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 1:3163799‑M2/29‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:3507856‑M2/21‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:231875‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:3016015‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:237509‑M2/21‑50 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:4947820‑M2/19‑49 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGc < 1:1897450‑M2/32‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:855629‑M2/33‑1 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:145835‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:2404689‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:2626881‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:2634769‑M2/35‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:1663092‑M2/14‑50 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:25083‑M2/37‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:5503418‑M2/37‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:2828864‑M2/38‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:3539281‑M2/38‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:514499‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:2716741‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:2815445‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:1175838‑M2/12‑50 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:3123742‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:5079399‑M2/39‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc > 1:4086237‑M2/11‑50 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc > 1:386990‑M2/11‑50 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc < 1:2204669‑M2/40‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:4173763‑M2/41‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:2409083‑M2/41‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:1778303‑M2/42‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:2579034‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:1117362‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:4792377‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:1318207‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:2323991‑M2/7‑49 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:1838201‑M2/44‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 1:4648832‑M2/45‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 1:3097493‑M2/45‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:3486133‑M2/46‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:4750645‑M2/48‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:1450271‑M2/48‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:610825‑M2/48‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa < 1:3221347‑M2/49‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:5315247/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:3469460/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:5406176/1‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:4361963/1‑49 (MQ=255) | GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |