| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 96 [0] | [0] 93 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 93 (1.280) | 54/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 | ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 1:1955631/50‑1 (MQ=255)ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 1:2827531/50‑1 (MQ=255)ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 1:3006603/50‑1 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:1878655‑M1/1‑48 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:3251824‑M1/1‑48 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:5049844‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 1:5511486‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 1:3597375‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGAGATAAAAGATAAAGGTGgataag < 1:4085921‑M1/50‑7 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:3564029‑M1/1‑43 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:2941243‑M1/50‑8 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:1149460‑M1/1‑43 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:1793051‑M1/50‑9 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:5151525‑M1/50‑9 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:2536602‑M1/50‑9 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg < 1:5028521‑M1/50‑10 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg < 1:4808195‑M1/50‑10 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:558220‑M1/1‑41 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg < 1:2082760‑M1/50‑10 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:5229278‑M1/50‑11 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:1067505‑M1/50‑12 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:4540514‑M1/50‑12 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:3286302‑M1/1‑38 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc < 1:768189‑M1/50‑13 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgc < 1:1943047‑M1/50‑15 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg < 1:1196657‑M1/49‑14 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg < 1:1177614‑M1/49‑14 (MQ=255) tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgca < 1:525459‑M1/50‑16 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:211619‑M1/1‑34 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag < 1:1896674‑M1/49‑17 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:2040350‑M1/1‑33 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:2664842‑M1/50‑19 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:4380935‑M1/50‑19 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat > 1:5376931‑M1/1‑32 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:5124132‑M1/50‑19 (MQ=255) tCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatg > 1:4707947‑M1/1‑31 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc > 1:2314552‑M1/1‑30 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc > 1:4397548‑M1/1‑30 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc > 1:3173692‑M1/1‑29 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatg < 1:258888‑M1/48‑20 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:3307979‑M1/1‑28 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:4689803‑M1/50‑25 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:551496‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:3174552‑M1/49‑24 (MQ=255) tGAACAGCGATAAAATATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:2165177‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:3189913‑M1/1‑25 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:3966046‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:898424‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:951405‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:1386656‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:3628375‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:4569176‑M1/48‑26 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg < 1:2925972‑M1/50‑29 (MQ=255) cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga < 1:774472‑M1/50‑30 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:3759650‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:5220292‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:3260150‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:299607‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 1:2766477‑M1/1‑20 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:3295850‑M1/1‑18 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:4542985‑M1/1‑18 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:4943700‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:4468402‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:1943309‑M1/1‑17 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:4958550‑M1/1‑16 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta < 1:794125‑M1/50‑35 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta < 1:107639‑M1/50‑35 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:1334446‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:2013038‑M1/1‑15 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:552485‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:5320038‑M1/1‑15 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:3732452‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:3578088‑M1/1‑15 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:3247679‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:1811686‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:1941149‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:5319948‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:5177796‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:4109293‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:4155246‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:4270583‑M1/1‑13 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg < 1:4084854‑M1/50‑39 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 1:3567873‑M1/1‑9 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 1:3735403‑M1/50‑43 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:2197749‑M1/1‑8 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:3293568‑M1/1‑7 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:2091728‑M1/1‑7 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:4114315‑M1/1‑7 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:5578626‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct < 1:118818‑M1/49‑44 (MQ=255) cggtGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 1:2904127‑M1/2‑5 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:546908‑M1/50‑46 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat < 1:118233‑M1/50‑47 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:3096292‑M1/1‑2 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:4629620‑M1/1‑2 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 1:4669075‑M1/1‑1 (MQ=255) | GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |