| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 73 [0] | [0] 70 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 67 (0.960) +GA |
47/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 | ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:3933379/50‑1 (MQ=255)ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:3568508/50‑1 (MQ=255) cAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg < 1:948732‑M1/50‑2 (MQ=255) cAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg < 1:3907109‑M1/50‑2 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:148173‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:114531‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:1079727‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:5214048‑M1/1‑47 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:1256885‑M1/50‑5 (MQ=255) ttCTCAGCAACACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:3571503‑M1/1‑44 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:1495326‑M1/1‑43 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:701592‑M1/1‑43 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:4024431‑M1/50‑12 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:2604080‑M1/50‑14 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg > 1:2992601‑M1/1‑36 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg > 1:3423153‑M1/1‑36 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 1:1885183‑M1/1‑35 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 1:730414‑M1/1‑35 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa < 1:2926216‑M1/50‑16 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa > 1:2452031‑M1/1‑35 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat > 1:3751208‑M1/1‑34 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattt < 1:4383385‑M1/50‑19 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:3191874‑M1/1‑32 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:3064552‑M1/1‑32 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:540241‑M1/50‑22 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac < 1:5024461‑M1/49‑21 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:3990504‑M1/1‑29 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta < 1:2466864‑M1/48‑20 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg > 1:2678506‑M1/1‑28 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg > 1:2658558‑M1/1‑28 (MQ=255) aTCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaa < 1:2312868‑M1/50‑24 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg > 1:4545385‑M1/1‑24 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg > 1:566319‑M1/1‑24 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga < 1:2998150‑M1/50‑28 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga > 1:5013220‑M1/1‑23 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac > 1:3151031‑M1/1‑22 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:1953116‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:378618‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:1806314‑M1/50‑29 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:693006‑M1/1‑20 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:695988‑M1/1‑20 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:1780405‑M1/1‑19 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:4554299‑M1/1‑19 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:2166625‑M1/1‑19 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 1:5055269‑M1/1‑18 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 1:4194806‑M1/49‑34 (MQ=255) cACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:743289‑M1/1‑15 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 1:4426230‑M1/49‑36 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 1:5513341‑M1/49‑36 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:1941216‑M1/1‑14 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 1:3561058‑M1/50‑38 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag < 1:942953‑M1/50‑39 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:477892‑M1/50‑40 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:3109838‑M1/1‑11 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga < 1:4823540‑M1/50‑42 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac > 1:3177520‑M1/1‑8 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggacgcattatcagtgact < 1:4878667‑M1/50‑44 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:3952468‑M1/1‑6 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:2537736‑M1/1‑6 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:5226974‑M1/1‑6 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:4906506‑M1/1‑6 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:3356822‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:1318424‑M1/1‑5 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:4216709‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:2277648‑M1/50‑47 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:3482907‑M1/1‑3 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa < 1:4406949‑M1/50‑48 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa < 1:2280738‑M1/50‑48 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:514654‑M1/50‑49 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 1:5411700‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:5024352‑M1/50‑49 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:271762‑M1/1‑1 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:1525793‑M1/1‑1 (MQ=255) | CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |