| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 96 [0] | [0] 98 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 94 (1.320) | 58/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761944‑3762041 | gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:5476755‑M1/1‑49 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa < 1:1662026‑M1/50‑5 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:3250882‑M1/1‑46 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:4120087‑M1/50‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:2709018‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:2328672‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:2455561‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:26403‑M1/50‑7 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga < 1:5285418‑M1/50‑8 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga > 1:2964926‑M1/1‑43 (MQ=255) ttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat > 1:5380723‑M1/1‑42 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:1278967‑M1/49‑10 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:2457317‑M1/49‑10 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:5300866‑M1/50‑12 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcc > 1:2264775‑M1/1‑39 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:1680043‑M1/50‑13 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:134610‑M1/49‑14 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata < 1:5352077‑M1/50‑16 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata < 1:85100‑M1/50‑16 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:3255327‑M1/50‑17 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:411863‑M1/50‑17 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:3106866‑M1/50‑17 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:5138547‑M1/1‑34 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:3946921‑M1/1‑33 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaag < 1:3369940‑M1/50‑19 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2968490‑M1/50‑20 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:4320129‑M1/1‑30 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:1419333‑M1/1‑30 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:5015326‑M1/1‑30 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:324605‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:3489618‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat < 1:40693‑M1/49‑21 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat < 1:1684021‑M1/49‑21 (MQ=255) tttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa > 1:5262626‑M1/1‑28 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:3892378‑M1/1‑27 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:2174927‑M1/1‑27 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:2811152‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:3711570‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:93256‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg < 1:3580348‑M1/49‑25 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:908201‑M1/49‑26 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:4280339‑M1/49‑28 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:1536495‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:1555015‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:4947949‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:3993409‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:4710224‑M1/1‑20 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:4329487‑M1/50‑32 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:1343463‑M1/50‑32 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:5144846‑M1/50‑33 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:3443853‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:2349027‑M1/1‑17 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:605536‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:3000138‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:242870‑M1/1‑17 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:4386258‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:4453817‑M1/50‑35 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:948878‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:2621854‑M1/50‑35 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg < 1:2229185‑M1/50‑36 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:547179‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:3689988‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:2184329‑M1/1‑14 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:5201367‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:330755‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:3389243‑M1/1‑13 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca > 1:2899281‑M1/1‑12 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:27785‑M1/50‑39 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:1164804‑M1/50‑39 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:4071267‑M1/50‑39 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:4370670‑M1/50‑39 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:4496635‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:828121‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:659807‑M1/49‑40 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:700658‑M1/1‑9 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:3096432‑M1/1‑9 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:4294824‑M1/1‑8 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:4307573‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:402871‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:5252125‑M1/49‑42 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:2282967‑M1/49‑42 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:3492382‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:1999424‑M1/50‑44 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:2471765‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:933326‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:1106302‑M1/1‑6 (MQ=255) aTGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:2304911‑M1/1‑5 (MQ=255) aTGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:1170249‑M1/1‑5 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttagc < 1:3138323‑M1/50‑47 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:1236708‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:5165094‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:115538‑M1/1‑4 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag < 1:3660562‑M1/50‑49 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:4127625‑M1/49‑48 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcagc < 1:208407‑M1/50‑50 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:2874393‑M1/1‑1 (MQ=255) | GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761944‑3762041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |