| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 102 [0] | [0] 100 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 97 (1.360) | 58/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc > 1:4282517‑M2/50‑50 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc > 1:3022717‑M2/50‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc < 1:3448500‑M2/3‑1 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 1:751214‑M2/5‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 1:66840‑M2/45‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 1:1257114‑M2/45‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:4627450‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:3851241‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:2985554‑M2/6‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:1027649‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:319708‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:2907927‑M2/43‑50 (MQ=255) ggcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:2842396‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:5183172‑M2/9‑1 (MQ=255) agcccttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:4799778‑M2/42‑49 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:996410‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:936934‑M2/41‑48 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3588405‑M2/41‑48 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:5322100‑M2/11‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:2507694‑M2/39‑49 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:4649301‑M2/38‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:4579089‑M2/36‑50 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 1:2401908‑M2/15‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:2073908‑M2/35‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:2029043‑M2/16‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:339603‑M2/34‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:3231227‑M2/34‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:4000469‑M2/34‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:5230907‑M2/34‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:1761798‑M2/33‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:5020385‑M2/33‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa > 1:227098‑M2/32‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa > 1:4833557‑M2/32‑49 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:1281580‑M2/20‑1 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:1738011‑M2/30‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:743175‑M2/29‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:4057378‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:2642766‑M2/23‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg > 1:3820711‑M2/27‑49 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGTAAGCAAAAATGaaa > 1:2400900‑M2/25‑50 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:2532063‑M2/25‑50 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:2466507‑M2/25‑50 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:4919159‑M2/24‑49 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:2030484‑M2/24‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:3539824‑M2/23‑48 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:4076578‑M2/22‑50 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:4694332‑M2/22‑50 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:4853047‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:3366646‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:4280251‑M2/31‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:1126312‑M2/31‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:2874808‑M2/31‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:1621017‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:2718324‑M2/19‑50 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:4869006‑M2/32‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:1179006‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:3506515‑M2/18‑49 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:3776452‑M2/18‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:1400853‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:5523231‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:3075831‑M2/17‑49 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa > 1:1585962‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:5334585‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:1977190‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:1958341‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:2818726‑M2/35‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:3582972‑M2/15‑50 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:1969898‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:3288580‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:4186021‑M2/37‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:1898306‑M2/14‑50 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:2149482‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa < 1:2574995‑M2/40‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:1111999‑M2/11‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa < 1:2542839‑M2/39‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:853438‑M2/11‑49 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:1989908‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:3475195‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:3516017‑M2/41‑1 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:2261170‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:863860‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:903203‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:5044600‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:4106596‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:1873239‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:4702381‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:3388057‑M2/9‑50 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:4533595‑M2/7‑50 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:5432872‑M2/44‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:5272051‑M2/6‑49 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:1291629‑M2/46‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:5091066‑M2/4‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:3419890‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:4517792‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT‑ATCGAAATGGGATg < 1:3456088‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:5264793‑M2/3‑50 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:3500038‑M2/48‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAACTGGGATGt > 1:3433369‑M2/2‑50 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:1886869‑M2/49‑1 (MQ=255) cgctacgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt > 1:3306676/1‑50 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |