| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.9% | 173.6 / 177.0 | 149 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (52/45); new base T (25/27); total (77/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.43e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 153 total aligned reads displayed.
GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 | gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:3128429/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:33019/1‑50 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:1283485/1‑50 (MQ=38) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc > 1:641976/1‑50 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 1:844749/50‑1 (MQ=38) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc > 1:3363924/1‑50 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 1:1772404/50‑1 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc > 1:362363/1‑50 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc > 1:427919/1‑50 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc > 1:3182471/1‑50 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc > 1:5302394/1‑50 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:3567536/1‑50 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:521452/1‑50 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:1756147/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTg < 1:3844133/50‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:1357957/1‑49 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:1691840/1‑49 (MQ=38) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa < 1:1106649/50‑1 (MQ=255) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGa < 1:1446828/50‑1 (MQ=38) tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt > 1:3897372/1‑50 (MQ=38) tttGTAGGGCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt > 1:135362/1‑50 (MQ=11) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:2322106/1‑50 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:124982/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:4825316/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:102908/1‑50 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:5245802/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:1881903/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:4983397/1‑49 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg < 1:2348192/49‑1 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa < 1:3885703/50‑1 (MQ=38) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc > 1:2343840/1‑50 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg > 1:683945/1‑50 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc < 1:4218721/49‑1 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg < 1:558924/50‑1 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt < 1:2461417/50‑1 (MQ=255) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:3578280/50‑1 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt > 1:5304379/1‑50 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:2967468/50‑1 (MQ=38) cGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 1:2222848/1‑50 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc < 1:1982087/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc < 1:153414/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc < 1:4720470/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc < 1:2541555/50‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcg < 1:5364667/50‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 1:5402018/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:1927430/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg < 1:2802227/50‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 1:2572642/49‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:1201362/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:970820/1‑50 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:1142680/1‑50 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:5336470/1‑50 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:2701116/1‑50 (MQ=255) gCGTTTATGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc < 1:710331/50‑1 (MQ=11) gCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc > 1:1556355/1‑50 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 1:3488448/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:1183263/1‑50 (MQ=255) cGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:2055293/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:4594147/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:2058580/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:3016074/1‑49 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:4647417/1‑50 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:400807/50‑1 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:2851432/1‑50 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:5243805/1‑50 (MQ=255) ttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:4489608/1‑50 (MQ=255) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:4592106/1‑49 (MQ=12) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:2863621/1‑49 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:3806745/49‑1 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:1884824/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:2639634/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:4991046/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:849829/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:169275/49‑1 (MQ=255) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 1:3487664/1‑50 (MQ=40) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 1:2999836/1‑50 (MQ=40) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:2316009/1‑50 (MQ=38) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 1:1786193/50‑1 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:3773740/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:352056/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:4131145/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:4893107/50‑1 (MQ=38) cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa > 1:1358828/1‑50 (MQ=38) cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 1:2690069/50‑1 (MQ=38) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:4919044/1‑50 (MQ=40) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg < 1:2269163/50‑1 (MQ=255) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 1:4652286/1‑50 (MQ=255) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg < 1:5510367/50‑1 (MQ=255) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg < 1:2956043/50‑1 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc < 1:2210995/50‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:2281854/1‑48 (MQ=255) aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAg < 1:4443099/50‑1 (MQ=255) cATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 1:3030462/50‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 1:1436418/1‑49 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 1:3655854/50‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 1:3898737/50‑1 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 1:2497043/1‑48 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:280231/50‑1 (MQ=255) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg > 1:3592179/1‑50 (MQ=40) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:4141974/50‑1 (MQ=38) | GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |