| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,086 | 0 | C | T | 47.4% | 14.4 / 121.6 | 76 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (19/21); new base T (18/18); total (37/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGAT > NC_000913/12039‑12135 | ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAg > 1:703753/1‑50 (MQ=255)ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAg > 1:116869/1‑50 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg < 1:3781588/49‑1 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg < 1:1225185/49‑1 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt > 1:415151/1‑50 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt > 1:535477/1‑49 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt < 1:3883150/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 1:4715461/50‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGtt < 1:3033935/49‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa < 1:1855079/50‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTg > 1:3177893/1‑49 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGa < 1:605730/50‑1 (MQ=255) agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGa > 1:5253962/1‑49 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa < 1:4480482/49‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGaaa < 1:2573579/50‑1 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAAc < 1:5479755/50‑1 (MQ=255) cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 1:2931064/1‑49 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAAcc < 1:3552215/49‑1 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAAc > 1:3601256/1‑48 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGa < 1:4869618/50‑1 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc < 1:267095/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg < 1:4271546/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACg < 1:1204324/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACg > 1:3481493/1‑50 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACg > 1:4509632/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 1:5251455/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGtt < 1:1591663/50‑1 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt < 1:3186715/50‑1 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGttt > 1:1190224/1‑50 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGttt > 1:3389210/1‑50 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 1:4141022/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTc < 1:4809074/50‑1 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCg > 1:1120316/1‑50 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCg > 1:1221289/1‑50 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCg > 1:4661603/1‑50 (MQ=255) agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg < 1:4143191/49‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc > 1:243934/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 1:3512050/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGccc > 1:2316181/1‑50 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc < 1:1161916/49‑1 (MQ=255) gtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTa > 1:4738007/1‑50 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt > 1:5540471/1‑50 (MQ=255) cTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAt > 1:4714726/1‑49 (MQ=255) gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:4182047/1‑49 (MQ=255) gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:2173208/1‑49 (MQ=255) gCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:3362878/1‑49 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa < 1:1086511/48‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa < 1:1418268/48‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:622755/47‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:2922035/47‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:610374/47‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa < 1:3604555/48‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa < 1:3955063/48‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACa < 1:2924049/50‑1 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:712523/1‑47 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:3141619/1‑47 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc > 1:4287892/1‑50 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc < 1:618477/50‑1 (MQ=255) aaaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc > 1:3980509/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:5145073/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:2799422/1‑50 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:626242/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:4368633/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:3742013/50‑1 (MQ=255) aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:1159969/1‑49 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:3066806/50‑1 (MQ=255) gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa > 1:5553113/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 1:2172832/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 1:4867923/50‑1 (MQ=255) aTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca < 1:453423/50‑1 (MQ=255) ttGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 1:4196039/1‑49 (MQ=255) tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca > 1:1563878/1‑50 (MQ=255) gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca < 1:4804723/49‑1 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatg < 1:1652028/50‑1 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat > 1:2462903/1‑49 (MQ=255) gCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatga < 1:180970/50‑1 (MQ=255) cAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatgat > 1:2387615/1‑50 (MQ=255) cAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatgat < 1:3021174/50‑1 (MQ=255) cAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatgat < 1:4386622/50‑1 (MQ=255) | TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGAT > NC_000913/12039‑12135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |