| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G | . | 47.8% | 92.0 / 95.4 | 46 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base G (11/13); new base . (10/12); total (21/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGG > NC_000913/379966‑380059 | gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg < 1:4483455/49‑1 (MQ=255)gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg < 1:5415636/49‑1 (MQ=255) gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggg < 1:5513855/50‑1 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg > 1:871448/1‑50 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg > 1:5352962/1‑50 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg > 1:962722/1‑50 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg < 1:3734162/50‑1 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggg < 1:500277/50‑1 (MQ=255) aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggg > 1:3712840/1‑50 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggggg > 1:698100/1‑50 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGc < 1:1490714/50‑1 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCt < 1:533317/50‑1 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCt < 1:14463/50‑1 (MQ=255) tATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATc > 1:4892649/1‑50 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAAt < 1:4292362/49‑1 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATc < 1:4077656/49‑1 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATc < 1:2161130/49‑1 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCg < 1:1857350/50‑1 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCgg > 1:4946048/1‑50 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCgg < 1:3312566/49‑1 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGc < 1:4150983/49‑1 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCgg > 1:1623018/1‑48 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCa < 1:896415/50‑1 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAg > 1:3800213/1‑50 (MQ=255) gTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAg > 1:1745190/1‑50 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAgg > 1:4900305/1‑49 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAggg > 1:1575104/1‑49 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAggg > 1:1286540/1‑48 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAg < 1:1704439/50‑1 (MQ=255) tgtgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAgg < 1:568547/50‑1 (MQ=255) gtgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAgg > 1:3415754/1‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgc > 1:327706/1‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgc > 1:3174778/1‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgcc < 1:5457140/50‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgcc < 1:5201543/50‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgcc < 1:1904458/49‑1 (MQ=255) ggTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgccg > 1:3398096/1‑50 (MQ=255) ggTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgccg > 1:829873/1‑50 (MQ=255) gTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgccg < 1:5180360/49‑1 (MQ=255) gTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgccg < 1:427568/49‑1 (MQ=255) tCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgccgc < 1:4440139/50‑1 (MQ=255) gaaaaaCAAAGAGAAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc < 1:4847461/47‑1 (MQ=255) aaaCAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCgg < 1:5270612/50‑1 (MQ=255) aaaCAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 1:4794099/1‑50 (MQ=255) cAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATa < 1:766579/50‑1 (MQ=255) cAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 1:3763205/50‑1 (MQ=255) cAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 1:1527215/50‑1 (MQ=255) aaaGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 1:1868616/50‑1 (MQ=255) aaaGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg > 1:4660631/1‑50 (MQ=255) aaaGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:133488/1‑50 (MQ=255) aaaGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:3753124/1‑50 (MQ=255) aaaGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:4135206/1‑50 (MQ=255) ggAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc < 1:4184484/50‑1 (MQ=255) ggAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcg > 1:2038432/1‑50 (MQ=255) aaGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:3030694/1‑49 (MQ=255) aGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:3265069/1‑48 (MQ=255) | GAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGG > NC_000913/379966‑380059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |