| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,477,150 | C→T | K90K (AAG→AAA) | fkpA ← | peptidyl‑prolyl cis‑trans isomerase FkpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,477,150 | 0 | C | T | 99.0% | 420.7 / NA | 103 | K90K (AAG→AAA) | fkpA | peptidyl‑prolyl cis‑trans isomerase FkpA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (36/66); total (36/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTTA > NC_000913/3477104‑3477195 | cGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCtttt < 1:1390793/49‑1 (MQ=255) gAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTAt > 1:1199602/1‑50 (MQ=255) gAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTAt < 1:316796/50‑1 (MQ=255) aaTGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTAt > 1:4231934/1‑49 (MQ=255) aaTGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTAt > 1:1776183/1‑49 (MQ=255) aTGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTAt > 1:5515956/1‑48 (MQ=255) aTGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCa < 1:160718/50‑1 (MQ=255) aTGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCa < 1:296658/50‑1 (MQ=255) tGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAg > 1:4974577/1‑50 (MQ=255) gCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAg > 1:3435269/1‑49 (MQ=255) gCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAg > 1:2518208/1‑49 (MQ=255) cTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGc > 1:1526861/1‑49 (MQ=255) cTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCa < 1:4348483/50‑1 (MQ=255) ttGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCa > 1:2163388/1‑49 (MQ=255) tGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCaaa > 1:917914/1‑50 (MQ=255) tGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCaaa > 1:3409223/1‑50 (MQ=255) gTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCaaa < 1:4031365/49‑1 (MQ=255) gTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCaaa < 1:2299038/49‑1 (MQ=255) gTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCaa < 1:3960693/48‑1 (MQ=255) tAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAAt < 1:4918786/49‑1 (MQ=255) tAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATg > 1:2336826/1‑50 (MQ=255) tAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATg > 1:2377820/1‑50 (MQ=255) tAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATg < 1:1613976/50‑1 (MQ=255) gagTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGc < 1:588725/49‑1 (MQ=255) gagTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGc < 1:3851849/49‑1 (MQ=255) gagTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGc < 1:2655496/49‑1 (MQ=255) gagTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCa < 1:232702/50‑1 (MQ=255) gagTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCa < 1:4322488/50‑1 (MQ=255) agTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCAt < 1:330215/50‑1 (MQ=255) agTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCAt < 1:3183232/50‑1 (MQ=255) gTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATc > 1:3288292/1‑50 (MQ=255) tCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATcc < 1:568211/50‑1 (MQ=255) tCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATcc < 1:3068893/50‑1 (MQ=255) tCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATcc < 1:4655344/50‑1 (MQ=255) tCTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATcc < 1:309871/50‑1 (MQ=255) cTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCt > 1:761090/1‑50 (MQ=255) cTGTTCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCt > 1:4627570/1‑50 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCt < 1:5075060/47‑1 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCt < 1:4035046/47‑1 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTg < 1:2681916/48‑1 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGaa > 1:3078677/1‑50 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGaa > 1:1992856/1‑50 (MQ=255) ttCGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGaa < 1:2845819/50‑1 (MQ=255) cGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAaca > 1:2568241/1‑50 (MQ=255) cGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAaca > 1:2271939/1‑50 (MQ=255) cGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAac < 1:1280292/49‑1 (MQ=255) cGATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAac < 1:4817203/49‑1 (MQ=255) gATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac > 1:3766378/1‑50 (MQ=255) gATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac > 1:194850/1‑50 (MQ=255) gATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac > 1:3588257/1‑50 (MQ=255) gATCTCTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAaca < 1:1310021/49‑1 (MQ=255) tctcTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac > 1:4246873/1‑48 (MQ=255) tctcTTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac > 1:3524334/1‑48 (MQ=255) ctctTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAg > 1:2628422/1‑50 (MQ=255) ctctTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAg > 1:2608433/1‑50 (MQ=255) tctTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc > 1:5259807/1‑50 (MQ=255) tctTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc > 1:3972746/1‑50 (MQ=255) tctTGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc > 1:3698447/1‑50 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac < 1:4195040/44‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAacac < 1:1984125/44‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACTcc < 1:222807/45‑1 (MQ=38) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACAcc < 1:2865886/45‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCa < 1:2975009/46‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc < 1:4795481/48‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc < 1:4862551/48‑1 (MQ=255) ttGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGc < 1:2066922/48‑1 (MQ=255) ttGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCa < 1:257653/46‑1 (MQ=255) tGGTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGAt > 1:4520184/1‑50 (MQ=255) ggTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCg < 1:1758341/47‑1 (MQ=255) ggTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGa < 1:2462493/48‑1 (MQ=255) ggTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGa < 1:3680906/48‑1 (MQ=255) ggTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGAt < 1:2496596/49‑1 (MQ=255) gTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCa < 1:4276467/50‑1 (MQ=255) gTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCa < 1:1707435/50‑1 (MQ=255) gTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCa < 1:3384171/50‑1 (MQ=255) gTCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACAACAGCGATCa < 1:1228/50‑1 (MQ=39) tCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAg < 1:3569422/50‑1 (MQ=255) tCGGAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAg < 1:5410628/50‑1 (MQ=255) ggAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt < 1:181274/50‑1 (MQ=255) ggAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt < 1:195544/50‑1 (MQ=255) ggAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt < 1:2426708/50‑1 (MQ=255) ggAGAGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt < 1:3831456/50‑1 (MQ=255) gagaGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt > 1:4557142/1‑49 (MQ=255) gagaGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTg < 1:2689635/50‑1 (MQ=255) gagaGTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTg < 1:4007201/50‑1 (MQ=255) gagTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGAt < 1:3787772/50‑1 (MQ=255) agTTTGCTTTTATCAGCAAATGCATCCTGAACACCATCGATCAGCTGATc < 1:1748356/50‑1 (MQ=38) agTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATc < 1:2946835/50‑1 (MQ=255) agTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATc < 1:2572040/50‑1 (MQ=255) gTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCt < 1:3246274/50‑1 (MQ=255) gTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCt < 1:3719842/50‑1 (MQ=255) gTTTGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCt > 1:2178985/1‑50 (MQ=255) tttGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCtt < 1:2930151/50‑1 (MQ=255) tttGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCtt > 1:2273897/1‑50 (MQ=255) tttGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCtt < 1:1446879/50‑1 (MQ=255) tGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCttt < 1:3536556/49‑1 (MQ=255) tGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCttt < 1:5505986/49‑1 (MQ=255) tGCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTTa > 1:4491660/1‑50 (MQ=255) gCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTTa < 1:2795040/49‑1 (MQ=255) gCTTTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTTa < 1:3381124/49‑1 (MQ=255) | CGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTTA > NC_000913/3477104‑3477195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |