BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	238.5 / NA	50	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (27/23); total (27/23)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               <  1:999419/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:270719/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:3407527/1‑49 (MQ=255)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:920910/49‑1 (MQ=38)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:3337559/1‑49 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:419927/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:1639480/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:2882219/1‑50 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                  >  1:3977136/1‑50 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:1507029/49‑1 (MQ=38)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:390055/49‑1 (MQ=38)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                >  1:1859626/1‑50 (MQ=39)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                >  1:2018814/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:2810256/48‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:3308203/1‑50 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               <  1:2010483/49‑1 (MQ=38)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               <  1:835872/49‑1 (MQ=38)

                 cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:236755‑M1/1‑50 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                            <  1:2205043‑M1/50‑2 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             <  1:2648291‑M1/49‑1 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             <  1:955514‑M1/49‑1 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:390088‑M1/1‑48 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:4052415‑M1/1‑48 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:3136963‑M1/1‑48 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          <  1:3796057‑M1/50‑4 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:3003467‑M1/1‑46 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         >  1:3627055‑M1/1‑45 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     <  1:1639800‑M1/50‑9 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     <  1:915344‑M1/50‑9 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:905182‑M1/1‑41 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    <  1:612532‑M1/49‑10 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    <  1:640315‑M1/49‑10 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:611910‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:1491364‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:925272‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:1056134‑M1/1‑37 (MQ=255)

                               cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:316460‑M1/1‑36 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            <  1:4163675‑M1/50‑18 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:4145899‑M1/1‑32 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc          <  1:1332806‑M1/50‑20 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:4226950‑M1/1‑31 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:1311777‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:4158368‑M1/1‑30 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         <  1:1126170‑M1/48‑21 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:2237234‑M1/1‑27 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:3675347‑M1/1‑27 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:56679‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:3037232‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     <  1:1539534‑M1/50‑25 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:2795011‑M1/1‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    >  1:1789897‑M1/1‑25 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:1698078‑M1/50‑26 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:3549048‑M1/50‑28 (MQ=255)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`