| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 57 [0] | [0] 51 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 51 (0.900) | 36/96 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA > NC_000913/770613‑770658 CGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:236755/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 1:2205043/50‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:2648291/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:955514/49‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3136963/1‑48 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:4052415/1‑48 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:390088/1‑48 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:3796057/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:3003467/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:3627055/1‑49 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:915344/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:1639800/50‑1 TTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:905182/1‑49 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:640315/49‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:612532/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:611910/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:1491364/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:925272/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:1056134/1‑50 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:316460/1‑49 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAG < 1:4163675/50‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:4145899/1‑50 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:1332806/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:4226950/1‑49 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:4158368/1‑50 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1311777/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:1126170/48‑1 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:2237234/1‑49 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:3675347/1‑49 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 1:2795011/1‑50 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 1:3037232/1‑50 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 1:56679/1‑50 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 1:1539534/50‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:1789897/1‑50 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:1698078/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 1:3549048/50‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:4057755/3‑50 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG < 1:2540521/50‑1 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:854897/1‑46 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAT < 1:853341/50‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAT < 1:2368774/50‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAT > 1:261289/1‑50 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGA < 1:1128832/49‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGT < 1:2625727/50‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 1:4309197/49‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 1:4033690/49‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 1:3417774/50‑1 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:199210/1‑49 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:3166754/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:1634239/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:221826/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:3360927/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:3070437/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:956533/49‑1 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC < 1:787293/50‑1 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:2177418/1‑49 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:1034824/49‑1 CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA > NC_000913/770613‑770658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |