| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 68 [0] | [0] 69 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 57 (1.310) +CAGATAATTCAA |
45/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:1979266/50‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:2171026/1‑49 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:3726657/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:150289/50‑1 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:1372359/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:4226955/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2046084/1‑50 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:4279631/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:933446/48‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:2666678/50‑1 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:875906/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:2545679/50‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:1626345/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:3013878/49‑1 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:102909/1‑50 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:1142446/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG < 1:2958551/50‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:1275291/48‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC < 1:2562880/50‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC < 1:1254210/50‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:581431/1‑50 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:2828167/1‑50 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG < 1:799631/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:2051177/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:4153717/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA > 1:1666386/1‑50 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:1932219/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:4126529/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:3660045/50‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:2448709/50‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGCGAT > 1:3228921/1‑50 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:2189218/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:3418415/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:3617595/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATACAAAGCGTGGCTGTGATG < 1:1463536/49‑1 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:872154/1‑49 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:2520178/1‑50 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:1952687/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:179096/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:2068874/46‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:1391044/46‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:1296234/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:2038387/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:1546191/48‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:1853420/47‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:19717/1‑49 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:579261/1‑49 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATga < 1:3970544/50‑3 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:3435319/1‑50 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA < 1:3843448/50‑1 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:1503033/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:942776/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:2197151/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:3998982/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:2680208/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:3495219/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:1977921/48‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:547072/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:1704543/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:867616/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA < 1:2072771/50‑1 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:2546685/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:3715855/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACG < 1:3073483/49‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:2146883/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:377151/48‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:2218963/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:100310/1‑49 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA < 1:2191729/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:441511/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:2895495/1‑49 ATTCAAAGCGTGGCTGTGATGATAGGAAGTATGTTTTTTACGTGAATGA < 1:3136304/49‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:3507626/50‑1 TCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:4277445/1‑50 TCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:3503778/1‑50 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:3781139/1‑49 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:4322372/1‑50 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |