| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 49 [0] | [0] 51 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 48 (0.850) | 40/96 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388842‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:3366214/1‑48GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:3508488/1‑48 TCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAG > 1:191926/1‑50 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGG < 1:4222767/50‑1 CCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCT < 1:257373/50‑1 TAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC > 1:748255/1‑50 GTTTATGCTAACTGTCAATAGCACAGCAAGCGCTATTACAGGGTCTCCT < 1:2911852/49‑1 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTT < 1:3886818/50‑1 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:3220291/1‑49 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC < 1:1737936/48‑1 TTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:779938/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC > 1:3877285/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:3478872/49‑1 ATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:2096333/1‑50 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:3822352/50‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:326182/50‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:3962478/1‑49 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:3428361/1‑49 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:975635/49‑1 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAA < 1:3626496/50‑1 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:1762893/1‑50 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:1351508/1‑50 AACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT > 1:454152/1‑50 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:2824772/49‑1 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:2524524/1‑49 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:2668168/1‑49 GTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC > 1:932389/1‑49 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAA > 1:3172806/1‑50 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCA < 1:1355968/49‑1 CAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC > 1:2092553/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG < 1:2867811/50‑1 ATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:3993240/1‑49 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:2678619/1‑48 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1749578/1‑48 ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:350158/50‑1 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTT > 1:4138593/1‑50 CAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG > 1:1633474/1‑50 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT < 1:2750411/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATT < 1:1985275/50‑1 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA < 1:4077402/50‑1 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA < 1:2795707/50‑1 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA > 1:4255226/1‑49 TATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:697089/1‑47 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:1384090/1‑46 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT < 1:2149820/50‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT < 1:2662985/50‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT < 1:1589503/50‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGA < 1:2539680/49‑1 TACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > 1:3297644/1‑49 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388842‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |