| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 69 [0] | [0] 68 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 67 (1.160) | 50/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA < 1:3938759/50‑1 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:3235566/1‑49 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:2151903/50‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 1:2901604/49‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:867537/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:10407/1‑49 GTCACTCTTACACCCGCGCCGGAAGGTGGTTATATGGTTTCTAAACAAAA < 1:1206504/50‑1 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:3449344/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:2701705/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:1988977/1‑49 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:445787/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 1:157808/50‑1 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 1:2503466/50‑1 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAAC < 1:2076238/49‑1 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC < 1:182083/50‑1 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:882315/1‑49 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:3192683/1‑50 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:1840088/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:256102/49‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:2271895/49‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:762645/50‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:936608/50‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:2093022/1‑50 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGC < 1:1385746/50‑1 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:3154545/50‑1 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:1139135/50‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC < 1:3361285/50‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC < 1:906143/50‑1 tGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:1477484/2‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:1178572/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:797593/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:1699785/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:2593203/50‑1 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG < 1:1230777/50‑1 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG < 1:486846/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT < 1:2534946/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:2286078/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT < 1:34943/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:922404/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:1801653/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG < 1:619780/50‑1 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 1:1329856/1‑50 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:2056444/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:4286981/50‑1 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 1:3596669/1‑50 CGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:2883990/50‑1 CGGTTATATGATTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:1962168/50‑1 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTA < 1:3605542/50‑1 GTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAA > 1:896384/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT < 1:3180264/50‑1 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:2492085/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:2658348/49‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:2967378/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:266687/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA < 1:2564448/50‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTC < 1:4088461/49‑1 GGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT > 1:989061/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:640713/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT < 1:3893926/49‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 1:335587/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:3714098/1‑49 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGCGTTTAATCGTCATT > 1:741195/1‑49 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:1134153/1‑48 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCTTCATTGA < 1:2984698/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG < 1:2737425/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG < 1:1523433/49‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > 1:3071546/1‑50 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |