BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,627,518	Δ25,244 bp		[ydfG]–[ynfP]	48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1627518	1652761	25244	62 [0]	[0] 62	[ydfG]–[ynfP]	[ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1627517	0 (0.000)	61 (1.080)	46/96	0.0	100%	coding (1/747 nt)	ydfG	3‑hydroxy acid dehydrogenase
*	?	NC_000913	1652762 =	0 (0.000)	61 (1.080)	46/96	0.0	100%	coding (77/111 nt)	ynfP	protein YnfP

GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1627468‑1627517

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT  >  NC_000913/1652762‑1652808

GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA                                                 <  1:3589254/50‑1

 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA                                                <  1:90201/50‑1

  ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG                                               <  1:436492/50‑1

  ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG                                               <  1:4335448/50‑1

  ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG                                               >  1:2321089/1‑50

     CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG                                             <  1:1103337/49‑1

     CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG                                             >  1:222979/1‑49

     CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG                                             >  1:3979711/1‑49

     CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG                                             <  1:4158191/49‑1

      CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG                                             >  1:3050561/1‑48

       GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG                                          <  1:1414045/50‑1

        TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT                                         <  1:3903159/50‑1

        TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT                                         >  1:3396040/1‑50

          CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC                                       <  1:3207216/50‑1

          CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC                                       >  1:1902946/1‑50

          CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG                                        <  1:3409164/49‑1

          CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG                                        <  1:3512153/49‑1

           TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGAGCAGTGCC                                      >  1:4050159/1‑50

             TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA                                    <  1:4230329/50‑1

             TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA                                    <  1:1898234/50‑1

             TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC                                      >  1:3132202/1‑48

              GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG                                   >  1:714425/1‑50

               TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC                                  <  1:1832932/50‑1

                 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA                                >  1:733557/1‑50

                  TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT                               >  1:1281564/1‑50

                  TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT                               <  1:480284/50‑1

                  TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA                                <  1:1130178/49‑1

                   TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC                              >  1:1042310/1‑50

                    GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC                             >  1:3612623/1‑50

                    GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC                              <  1:3180912/49‑1

                     ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC                            >  1:1343520/1‑50

                       ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA                          <  1:978555/50‑1

                       ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA                          <  1:650185/50‑1

                       ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA                          >  1:3422310/1‑50

                        CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT                         <  1:4194003/50‑1

                         ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA                        >  1:2453062/1‑50

                         ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCAAGCCATCCCGATA                        <  1:1241486/50‑1

                          CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC                       >  1:3708378/1‑50

                          CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC                       >  1:8065/1‑50

                           AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT                      <  1:356762/50‑1

                           AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT                      <  1:3729005/50‑1

                           AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT                      <  1:141267/50‑1

                            AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG                     >  1:3669132/1‑50

                            AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG                     >  1:2691744/1‑50

                             AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC                    <  1:756546/50‑1

                               GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG                  <  1:2327088/50‑1

                                CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC                 <  1:3736896/50‑1

                                 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT                >  1:766187/1‑50

                                   TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT              >  1:1778963/1‑50

                                    GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT              >  1:2255320/1‑49

                                     AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA            >  1:4227434/1‑50

                                     AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA            >  1:3177810/1‑50

                                     AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC             <  1:653044/49‑1

                                       GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC          <  1:15851/50‑1

                                        AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA         <  1:40781/50‑1

                                        AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA         <  1:3601461/50‑1

                                        AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA         <  1:2771504/50‑1

                                           AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT      <  1:1153350/50‑1

                                           AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT      <  1:471847/50‑1

                                           AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT      <  1:736701/50‑1

                                             TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC    >  1:2016995/1‑50

                                               AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT  <  1:2068349/50‑1

GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1627468‑1627517

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT  >  NC_000913/1652762‑1652808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.