| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 60 [0] | [0] 59 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 59 (1.020) | 42/98 | 0.0 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997065‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:172655/50‑1TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:2645219/49‑1TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:232494/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:146515/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:168592/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:165773/49‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT < 1:2898311/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA < 1:2961915/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA > 1:2483188/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:3470848/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC > 1:3733289/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:1511396/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC > 1:2032869/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:4200516/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:97715/50‑1 CAGAAACTTCTCGAGGAACTAGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:2679609/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:3121080/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:3773099/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:1658633/50‑1 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGT > 1:900207/1‑50 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTT < 1:2753475/50‑1 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTT < 1:1085661/50‑1 AAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTT > 1:4009419/1‑50 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:1830646/50‑1 ACTTCTCGAGGAACTGGCGGGTGCGAGGCCGCGCGGTCCCGTAACGTTTA > 1:3112677/1‑50 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:2592491/50‑1 TTCTCGAGGAACTGGCGGGTGCGAGGCTGCCCGGTTTCGTAACGTTTAT > 1:3984292/1‑49 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:1877660/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT < 1:4149744/49‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:334977/47‑1 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:450833/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:3106330/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:2824109/1‑50 ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT < 1:633317/50‑1 ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT < 1:3632331/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:528852/1‑49 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:3041151/1‑48 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:450931/1‑48 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAA < 1:898701/48‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:3904774/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:3930564/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:3939736/1‑49 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:4120017/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:3914281/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:4022111/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG < 1:1143536/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:3527606/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:287034/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:272585/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA > 1:1278671/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:471225/1‑50 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:1584645/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:1096496/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA < 1:4181738/48‑1 CTCGGTTCAGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:3454155/50‑1 GGTTCCGTAACGTTTGTCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:367413/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:4035754/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:158055/48‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:740633/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997065‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |