| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 49 [0] | [0] 48 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 47 (0.810) | 38/98 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509584‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA > NC_000913/2517950‑2517996 GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACA < 1:753057/49‑1 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC < 1:1410298/50‑1 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:450902/1‑50 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:1655802/1‑50 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC < 1:314907/50‑1 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:503078/1‑50 AGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCG > 1:2431109/1‑50 GCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:2994817/1‑50 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:2401303/1‑49 TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:2700014/1‑50 GGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:3291193/1‑50 GGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:1629754/1‑50 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:645370/50‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:2349218/50‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:936571/1‑49 GCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTA < 1:4131398/50‑1 GCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT > 1:2964521/1‑49 TAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCG > 1:2581470/1‑49 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:701570/50‑1 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:2544426/50‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:322119/1‑50 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG < 1:711821/50‑1 TATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1751710/1‑49 ATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1558847/1‑48 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTG < 1:829450/50‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC < 1:2857511/48‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAG < 1:2923880/46‑1 CCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGT < 1:2824508/50‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTA < 1:3152870/50‑1 CCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:1668151/1‑50 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:2791077/50‑1 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:2619081/50‑1 GCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:1381327/50‑1 CATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:1997067/1‑49 TAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:3474682/1‑49 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:3492306/1‑49 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1899573/1‑49 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1920927/1‑48 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1448214/1‑48 GAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC > 1:2033251/1‑50 AATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG > 1:537134/1‑50 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG < 1:370490/50‑1 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG > 1:2894250/1‑50 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAA < 1:879069/50‑1 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCA > 1:1237178/1‑49 ACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA < 1:617134/50‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:3574556/1‑48 GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509584‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA > NC_000913/2517950‑2517996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |