| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 41 [0] | [0] 41 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 38 (0.680) +GA |
29/94 | 0.3 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:1738172/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:1896644/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:2133081/1‑49 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:2565086/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2822800/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:2748513/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:1893380/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:1647158/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:2686636/1‑50 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:3827363/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:1124081/48‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:3472856/48‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:4029199/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:3886938/1‑50 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:4175392/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:3378566/50‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:2490308/1‑50 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:234455/49‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:487854/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:3353456/50‑1 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:715701/1‑50 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:3984056/1‑50 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:3266710/1‑50 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:624514/1‑49 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 1:584120/49‑1 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:2769856/1‑49 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:184192/1‑49 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:4327002/1‑50 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:2657384/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:2162596/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:1123644/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:3045923/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:2545754/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:428811/50‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:2835615/1‑50 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:3024799/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:2077218/50‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:3321635/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:115987/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:49608/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:3126706/50‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:1827199/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:4268855/1‑49 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |