BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,453,928	Δ15,926 bp		gspA–[chiA]	16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3453928	3469853	15926	44 [0]	[0] 43	gspA–[chiA]	gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3453927	0 (0.000)	39 (0.720)	31/92	0.2	100%	coding (1/420 nt)	gspB	putative general secretion pathway protein B
*	?	NC_000913	3469854 =	0 (0.000)	39 (0.720)	31/92	0.2	100%	intergenic (‑1/+291)	chiA/tufA	endochitinase/translation elongation factor Tu 1

CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902

CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC                                                     <  1:216831/50‑1

 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA                                                    <  1:977400/50‑1

  GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   >  1:139334/1‑50

  GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:465766/50‑1

    GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 >  1:4303286/1‑50

         CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                            <  1:4024648/50‑1

            TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         >  1:2689877/1‑50

            TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         <  1:3817400/50‑1

             TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        >  1:592022/1‑50

              TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:2999932/49‑1

                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                     <  1:2045512/48‑1

                   CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                  >  1:4137561/1‑50

                   CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC                                   <  1:2632599/49‑1

                    TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                  >  1:1604762/1‑49

                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                <  1:3324982/49‑1

                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                 <  1:2606436/48‑1

                           GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT                          <  1:4001582/50‑1

                             GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC                        <  1:944753/50‑1

                             GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC                        <  1:3241458/50‑1

                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                       >  1:2418137/1‑49

                                 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:566592/1‑50

                                 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:171938/1‑50

                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   <  1:894969/50‑1

                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   <  1:4126596/50‑1

                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:3261583/1‑49

                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:4191621/1‑49

                                   ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                  <  1:599036/50‑1

                                   ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   >  1:668141/1‑49

                                     ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAATACAA                 >  1:2695573/1‑49

                                     ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:1645153/1‑49

                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:2111073/50‑1

                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA                <  1:1147294/49‑1

                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:3137076/1‑48

                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT             <  1:3904559/50‑1

                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT             <  1:3701851/50‑1

                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            <  1:1065559/50‑1

                                          ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC           >  1:1404294/1‑50

                                           TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT          <  1:2270389/50‑1

                                           TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT          <  1:352017/50‑1

                                            TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         >  1:1863845/1‑50

                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:4059495/1‑50

                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:3950793/1‑50

                                                ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA     <  1:2645324/50‑1

                                                 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:3202594/50‑1

                                                   TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:1203284/50‑1

                                                   TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:267416/50‑1

CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.