BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,496,676	Δ53,036 bp		intB–fimH	54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4496676	4549711	53036	61 [0]	[0] 62	intB–fimH	intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4496675	0 (0.000)	59 (1.040)	45/96	0.0	100%	intergenic (+186/‑75)	leuX/intB	tRNA‑Leu/KpLE2 phage‑like element; putative integrase
*	?	NC_000913	4549712 =	0 (0.000)	59 (1.040)	45/96	0.0	100%	intergenic (+2/+241)	fimH/gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter

ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4496627‑4496675

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  >  NC_000913/4549712‑4549760

ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG                                                  <  1:390521/50‑1

   GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA                                               <  1:2964000/50‑1

   GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA                                               <  1:133701/50‑1

   GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA                                                <  1:904070/49‑1

    TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              >  1:2437874/1‑50

     ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              >  1:674764/1‑49

     ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              >  1:1297136/1‑49

     ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              >  1:1351456/1‑49

     ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT                                              >  1:2089877/1‑49

       TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA                                            >  1:2210523/1‑49

         CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG                                         >  1:2812269/1‑50

         CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA                                          <  1:2896630/49‑1

         CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA                                          <  1:1452534/49‑1

          CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG                                         <  1:3437900/49‑1

           GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA                                       <  1:1070490/50‑1

           GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA                                       >  1:736593/1‑50

           GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA                                       <  1:174774/50‑1

            GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC                                      <  1:2190386/50‑1

               CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT                                   >  1:906229/1‑50

                GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG                                  <  1:1224150/50‑1

                 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 >  1:1855000/1‑50

                 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 >  1:111035/1‑50

                 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 <  1:855879/50‑1

                  TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT                                <  1:1990318/50‑1

                  TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT                                <  1:3347110/50‑1

                  TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC                                 >  1:122708/1‑49

                   AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT                                >  1:299960/1‑49

                    ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA                              <  1:1253268/50‑1

                    ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA                              >  1:869507/1‑50

                    ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA                              >  1:2390662/1‑50

                    ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA                               <  1:262695/49‑1

                     TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT                             <  1:944458/50‑1

                     TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT                             <  1:1040078/50‑1

                        TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT                          >  1:1737022/1‑50

                         TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG                         >  1:1201930/1‑50

                          GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT                          <  1:1612125/48‑1

                           TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG                        >  1:4229909/1‑49

                            ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA                      >  1:2927752/1‑50

                             CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC                     <  1:918608/50‑1

                             CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC                     <  1:693650/50‑1

                             CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA                      <  1:3482270/49‑1

                              CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG                    <  1:3625788/50‑1

                              CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG                    <  1:963746/50‑1

                                 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA                 <  1:1557870/50‑1

                                  AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA                 >  1:1832867/1‑49

                                  AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA                 >  1:2242002/1‑49

                                   GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA               <  1:2526946/50‑1

                                    GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT              <  1:3319044/50‑1

                                     GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT              >  1:4279308/1‑49

                                      AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA            <  1:318222/50‑1

                                        GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC          <  1:3002403/50‑1

                                        GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC          <  1:762506/50‑1

                                        GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC          >  1:2387486/1‑50

                                         GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT         <  1:3431202/50‑1

                                           ATACGAGACATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG        >  1:3251394/1‑49

                                           ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA       <  1:398796/50‑1

                                            TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG        >  1:3618431/1‑48

                                             ACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG     >  1:1137388/1‑50

                                               GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT   <  1:478324/50‑1

                                                AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  <  1:2847460/50‑1

                                                AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT   >  1:2476100/1‑49

ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4496627‑4496675

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA  >  NC_000913/4549712‑4549760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.