| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 59 [0] | [0] 60 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 59 (1.020) | 45/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 | aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:4218480‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:554535‑M1/1‑48 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc > 1:3856883‑M1/1‑47 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc < 1:2549721‑M1/50‑6 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt < 1:2171193‑M1/50‑8 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:2500822‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:3237527‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:3044494‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:291403‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:2901911‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:211120‑M1/1‑39 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 1:3804433‑M1/50‑13 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:1630196‑M1/1‑37 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:3104290‑M1/1‑37 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:4063823‑M1/1‑36 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:2021425‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:3542432‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:4314759‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:319674‑M1/1‑35 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:3924127‑M1/50‑17 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:966403‑M1/50‑17 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata > 1:2257090‑M1/1‑34 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:1346318‑M1/50‑18 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:793959‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:1242902‑M1/1‑31 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:2876875‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:1737416‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg > 1:3722045‑M1/1‑28 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 1:26481‑M1/1‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac < 1:1016923‑M1/50‑26 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaacctg > 1:2812049‑M1/1‑23 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:385004‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:3503788‑M1/49‑27 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:3118430‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:323640‑M1/50‑29 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:838036‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:3158204‑M1/50‑30 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:2393039‑M1/50‑30 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:957723‑M1/1‑20 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat > 1:1667206‑M1/1‑18 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:3563635‑M1/50‑34 (MQ=255) aTTCCGGCCTGCTGTGttcgctttaaaacatatcatgaaactgggtatgc > 1:1054820‑M1/1‑16 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:3335821‑M1/1‑13 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:3412202‑M1/1‑13 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt < 1:3982638‑M1/49‑37 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:2572081‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:1880141‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt < 1:1710711‑M1/50‑40 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:1528229‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct < 1:942411‑M1/50‑42 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:4067980‑M1/1‑6 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:787557‑M1/1‑6 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:3490749‑M1/1‑6 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct < 1:3334679‑M1/50‑46 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc < 1:1982035‑M1/49‑45 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:2026799‑M1/48‑44 (MQ=255) gtgttcgctttaaaacatatcatggaactgggtatgttttgtctgcctgc < 1:474071‑M1/50‑48 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:2942966‑M1/1‑2 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 1:2815928‑M1/1‑1 (MQ=255) | AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |