| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 88 [0] | [0] 84 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 82 (1.450) | 54/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:1415136‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:3132563‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1037417‑M1/49‑1 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:3871942‑M1/49‑1 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:4059706‑M1/1‑49 (MQ=255) ttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:2198835‑M1/1‑48 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:1959184‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:218776‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:2985812‑M1/49‑3 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:3828357‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:2360401‑M1/49‑4 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:758842‑M1/49‑4 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:3506983‑M1/49‑4 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 1:135296‑M1/50‑6 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 1:1573807‑M1/50‑6 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg < 1:923338‑M1/50‑7 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg < 1:2433636‑M1/50‑7 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1147189‑M1/1‑44 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2480755‑M1/1‑43 (MQ=255) aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2304831‑M1/1‑42 (MQ=255) tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:3012866‑M1/1‑39 (MQ=255) tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:91711‑M1/1‑39 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:1189945‑M1/1‑38 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:2968496‑M1/1‑38 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:2293201‑M1/47‑11 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:1597153‑M1/50‑16 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:2285307‑M1/49‑15 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:2055272‑M1/1‑34 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 1:1870984‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 1:3634318‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:2221819‑M1/1‑33 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:3082037‑M1/1‑33 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:3844101‑M1/1‑33 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag < 1:3860549‑M1/50‑19 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:2135497‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:2778539‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:2717356‑M1/50‑20 (MQ=255) tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt > 1:1295305‑M1/1‑30 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 1:2548337‑M1/1‑29 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 1:73269‑M1/1‑29 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 1:2964300‑M1/1‑29 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagcttattaaagttg < 1:3103506‑M1/49‑22 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1030574‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:100336‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:27129‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:4234837‑M1/48‑21 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc < 1:1051302‑M1/50‑24 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1822112‑M1/1‑27 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:271547‑M1/50‑25 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:3945763‑M1/50‑25 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:1205902‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:1292075‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:3729261‑M1/1‑24 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc < 1:4331155‑M1/49‑28 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc < 1:3488537‑M1/49‑28 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:330927‑M1/49‑29 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 1:1814035‑M1/1‑20 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 1:2955656‑M1/1‑20 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt > 1:959234‑M1/1‑18 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt > 1:555557‑M1/1‑18 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:1115123‑M1/1‑17 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg > 1:457021‑M1/1‑15 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:2699623‑M1/49‑35 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:332090‑M1/49‑35 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:3248311‑M1/48‑34 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:2302800‑M1/1‑14 (MQ=255) tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 1:2896888‑M1/1‑13 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 1:4150343‑M1/1‑12 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 1:730644‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 1:4347860‑M1/1‑12 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 1:3310627‑M1/1‑12 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag > 1:2492763‑M1/1‑9 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 1:104468‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga < 1:4302173‑M1/48‑40 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga < 1:1706660‑M1/48‑40 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt > 1:2486153‑M1/1‑8 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:3448797‑M1/50‑43 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtgt > 1:2306169‑M1/1‑6 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcagcgtccggagaagtgt > 1:920219‑M1/1‑6 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:789590‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtg < 1:3829103‑M1/48‑44 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 1:2764873‑M1/1‑3 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:3636524‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg < 1:2241409‑M1/50‑49 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:666605‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:2414997‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc > 1:3529008‑M1/1‑1 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1672127‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |