| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 62 [0] | [0] 61 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 56 (1.010) | 40/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 | ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:4300362‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:1293015‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg > 1:2998712‑M2/49‑50 (MQ=255) tctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg < 1:3616311‑M2/2‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 1:1303621‑M2/47‑50 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 1:899207‑M2/47‑50 (MQ=255) taccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt > 1:2752045‑M2/46‑50 (MQ=255) taccagaaaattcacggcatcggctagggggataccggcatcgatAGTCt > 1:3823114‑M2/46‑50 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:3540146‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:3847624‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:1901036‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg > 1:121293‑M2/44‑49 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGt < 1:2955034‑M2/7‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 1:1854679‑M2/43‑50 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 1:1863896‑M2/43‑50 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:2818690‑M2/42‑50 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:546917‑M2/9‑1 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:2916651‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:2476014‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:2168713‑M2/40‑48 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:1199429‑M2/39‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:1660942‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:387972‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:1687661‑M2/15‑1 (MQ=255) tcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt > 1:3485294‑M2/35‑50 (MQ=255) tcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt > 1:807828‑M2/35‑50 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:1011268‑M2/34‑50 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:1086967‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:4310897‑M2/20‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg > 1:663830‑M2/30‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:2653250‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 1:2858519‑M2/23‑1 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:3868229‑M2/24‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:711876‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:1010048‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt < 1:1249316‑M2/25‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa < 1:3360264‑M2/28‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:3466269‑M2/23‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:3087426‑M2/29‑1 (MQ=255) gggcgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:3136962‑M2/20‑50 (MQ=255) gtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCa < 1:2607405‑M2/33‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:3982263‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc > 1:914757‑M2/15‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc > 1:2517128‑M2/15‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:1861119‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:1774480‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 1:2897304‑M2/36‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:3284497‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:2368157‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:65789‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa < 1:4025109‑M2/38‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:906151‑M2/40‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:2068948‑M2/10‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:4049775‑M2/7‑50 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:125999‑M2/6‑50 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGc < 1:896397‑M2/46‑1 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:28994‑M2/3‑50 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt < 1:1699583‑M2/48‑1 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt < 1:1883409‑M2/48‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATc < 1:2162954‑M2/49‑1 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:2016044/1‑50 (MQ=255) | ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |