| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 88 [0] | [0] 88 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 86 (1.480) | 52/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
ACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377268‑377366 | gaatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgg < 1:3882112‑M2/1‑1 (MQ=255) aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:2209851‑M2/49‑50 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:4146847‑M2/48‑49 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:726777‑M2/3‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:2525959‑M2/3‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:2618416‑M2/4‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:177318‑M2/4‑1 (MQ=255) cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:1179500‑M2/46‑48 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:3775981‑M2/45‑50 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:3186763‑M2/45‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:3952358‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:4105443‑M2/7‑1 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:3367244‑M2/44‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 1:2125054‑M2/43‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:4001990‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:571179‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:3481727‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:1840482‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:804242‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:3781957‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:2515212‑M2/8‑1 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:488843‑M2/42‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:1780260‑M2/42‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:2398627‑M2/42‑50 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:3759529‑M2/10‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:2756522‑M2/11‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:2934126‑M2/11‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:2630368‑M2/11‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:1145389‑M2/12‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:1970249‑M2/12‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1141731‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:319059‑M2/12‑1 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcgc < 1:3945394‑M2/14‑1 (MQ=255) tcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCa < 1:1949184‑M2/15‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:83281‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1152790‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:2423215‑M2/16‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:234501‑M2/33‑50 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt < 1:1809663‑M2/18‑1 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:3909646‑M2/32‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:284651‑M2/31‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:1055532‑M2/31‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:2120733‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:4077287‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:887172‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc > 1:3764265‑M2/30‑50 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:1165404‑M2/22‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:809216‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:1773978‑M2/27‑50 (MQ=255) ctgaacagcgataaaagataaaggagGATAAGTCGTGCGCAGATGCCTGa > 1:2968467‑M2/27‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:549915‑M2/25‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:3372442‑M2/25‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:1653406‑M2/25‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:3184793‑M2/25‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:612935‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:1824682‑M2/26‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:754778‑M2/26‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:1509584‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:171395‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:1558771‑M2/27‑1 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:354367‑M2/22‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:1362936‑M2/19‑50 (MQ=255) cgataaaagataaaggcgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:4306595‑M2/19‑50 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:1603469‑M2/18‑49 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa < 1:2733688‑M2/34‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:203357‑M2/16‑50 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:3512242‑M2/16‑50 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:980269‑M2/15‑50 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:3496051‑M2/15‑50 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:1907095‑M2/15‑50 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:2965465‑M2/15‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:3896836‑M2/14‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:1338927‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:165904‑M2/14‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg < 1:3352727‑M2/36‑1 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg < 1:344806‑M2/38‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 1:192280‑M2/39‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg < 1:675626‑M2/40‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:2597319‑M2/9‑50 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:3856345‑M2/8‑50 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt < 1:3023469‑M2/44‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGtcttgt < 1:1579905‑M2/46‑3 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt < 1:4364445‑M2/46‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:1008412‑M2/3‑48 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg > 1:3945997‑M2/2‑50 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg > 1:3604962‑M2/2‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 1:309242/1‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:4167716/49‑1 (MQ=255) | ACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377268‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |