| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 42 [0] | [0] 42 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 42 (0.730) | 37/98 | 0.1 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt < 1:831674‑M2/1‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:345864‑M2/49‑50 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 1:3024093‑M2/3‑1 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 1:884818‑M2/3‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:3147539‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:4228842‑M2/43‑49 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:1943991‑M2/42‑48 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:2141246‑M2/41‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:59781‑M2/40‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:1377968‑M2/40‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc < 1:635827‑M2/11‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc < 1:300803‑M2/11‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc < 1:137313‑M2/11‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:1959044‑M2/39‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:3372990‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:264824‑M2/15‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:1185338‑M2/36‑50 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:2907591‑M2/35‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:2958489‑M2/18‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:2096028‑M2/17‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac < 1:2625099‑M2/21‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:3898167‑M2/22‑1 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:2745710‑M2/28‑50 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:3310348‑M2/28‑50 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:869652‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:1275005‑M2/23‑1 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:3058700‑M2/25‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:3857629‑M2/28‑1 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:533420‑M2/21‑50 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:1721781‑M2/19‑48 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:4123668‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:1469113‑M2/33‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:3639514‑M2/38‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1633878‑M2/13‑47 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1495701‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:456623‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:3779195‑M2/39‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:2262641‑M2/41‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:79548‑M2/4‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:1804332‑M2/47‑1 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:3130877‑M2/3‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 1:2429796‑M2/48‑1 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |