| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,811,208 | 0 | T | C | 50.0% | 2.1 / 115.5 | 70 | V92A (GTT→GCT) | tcyP | cystine/sulfocysteine:cation symporter |
| Reads supporting (aligned to +/- strand): ref base T (12/23); new base C (16/19); total (28/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTGA > NC_000913/1811159‑1811255 | ctgcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGt > 1:1407601/1‑50 (MQ=255) gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTg > 1:3806812/1‑50 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGtt < 1:2504149/48‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGtt < 1:3206720/48‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGtt < 1:213845/48‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGtt < 1:651701/48‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGc < 1:1405993/50‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGc < 1:3560001/50‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc > 1:196065/1‑50 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc < 1:1632619/50‑1 (MQ=255) aaaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGcc > 1:2692277/1‑50 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGccc < 1:2178266/50‑1 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGccc > 1:2094785/1‑50 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 1:3129325/50‑1 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 1:1777657/50‑1 (MQ=255) aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCg < 1:3275510/50‑1 (MQ=255) aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCg > 1:2018717/1‑50 (MQ=255) aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCg < 1:2791349/50‑1 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 1:4300922/1‑50 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 1:2135987/1‑50 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCt < 1:4055847/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc < 1:311304/49‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 1:2162094/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt > 1:1772069/1‑50 (MQ=255) tCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg < 1:1701252/50‑1 (MQ=255) cGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg > 1:1818260/1‑49 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGc < 1:769005/49‑1 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCa > 1:2740376/1‑50 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCa > 1:683997/1‑50 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:4046512/1‑50 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:1475655/1‑50 (MQ=255) gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:3788916/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 1:2290907/1‑50 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATaa < 1:772938/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa < 1:1210097/49‑1 (MQ=255) tGCCGCTAGTCTTCGCCTCTATGCTGAGCGCGGTTGCCCGTCTGCATaa < 1:3245501/49‑1 (MQ=255) ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACg < 1:3727936/49‑1 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCa > 1:2608209/1‑50 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCa > 1:2218706/1‑50 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAt > 1:1504321/1‑50 (MQ=255) ttAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtc < 1:819562/50‑1 (MQ=255) ttAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtc < 1:123028/50‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtct < 1:2948405/49‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtct < 1:3838455/49‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 1:66782/49‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtctc < 1:325568/49‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCAtctc < 1:3963480/49‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCa < 1:1380642/50‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 1:2954712/1‑48 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCa < 1:1408255/50‑1 (MQ=255) cTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGt > 1:426251/1‑50 (MQ=255) cGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGtt < 1:84094/48‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 1:1991328/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 1:1478996/47‑1 (MQ=255) cGCCTCTATGCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTa < 1:2695662/49‑1 (MQ=255) gCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg > 1:20184/1‑50 (MQ=255) ctATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCaa > 1:2379181/1‑49 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa > 1:1579132/1‑50 (MQ=255) ttCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt < 1:257078/49‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa < 1:2489503/48‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt < 1:927787/49‑1 (MQ=255) tCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt > 1:671916/1‑48 (MQ=255) cTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 1:1967412/49‑1 (MQ=255) tGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGt > 1:346882/1‑50 (MQ=255) aGCGCTGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGt < 1:3664451/48‑1 (MQ=255) aGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGt < 1:3278677/48‑1 (MQ=255) gcgcGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt < 1:4307876/50‑1 (MQ=255) gcgcGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt > 1:2842656/1‑50 (MQ=255) cgcgGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTc < 1:461205/50‑1 (MQ=255) cgcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTc < 1:4366009/50‑1 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt < 1:2289332/50‑1 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:102647/1‑50 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt < 1:781311/50‑1 (MQ=255) cgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTg < 1:3122735/50‑1 (MQ=255) ggTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTGa > 1:2840297/1‑50 (MQ=255) | CTGCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTGA > NC_000913/1811159‑1811255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |