| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.4% | 63.8 / 190.6 | 129 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (35/38); new base T (24/32); total (59/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 135 total aligned reads displayed.
GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 | gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:2363328/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:2072195/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:620306/50‑1 (MQ=38) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc > 1:2280786/1‑50 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 1:502129/50‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 1:3624579/50‑1 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 1:3717973/50‑1 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc < 1:505435/50‑1 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:3276575/1‑50 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:2008553/1‑50 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:394340/1‑49 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:1716098/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:2328497/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt < 1:2076696/49‑1 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTg < 1:1379191/50‑1 (MQ=38) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa < 1:41845/50‑1 (MQ=255) tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt > 1:3062255/1‑50 (MQ=255) tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt > 1:366485/1‑50 (MQ=38) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:4284484/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:2139808/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:1359959/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:2825759/1‑50 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt < 1:1081559/49‑1 (MQ=38) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg > 1:3950239/1‑50 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:2769657/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc > 1:2403135/1‑50 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc > 1:3415476/1‑50 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:1235224/1‑50 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:2946969/1‑50 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:544915/49‑1 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg < 1:1123026/49‑1 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa < 1:4367686/50‑1 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:695492/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:3749625/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:4337386/50‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg > 1:802003/1‑50 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 1:4193628/1‑50 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg < 1:456841/50‑1 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 1:1391446/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:715324/1‑50 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt < 1:1223794/50‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 1:1170814/1‑50 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:2065558/1‑50 (MQ=38) cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:346330/1‑50 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:611515/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:3590863/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:2968355/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:3397863/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:2454264/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:3224488/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:4124166/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt < 1:1626691/49‑1 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTg > 1:2700088/1‑50 (MQ=40) aTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc < 1:35024/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:3214761/1‑50 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcg < 1:1130716/50‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 1:2925398/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:2949053/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 1:1581748/49‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 1:263661/49‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:2727069/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg < 1:618354/50‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg < 1:457126/50‑1 (MQ=255) gCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc > 1:511931/1‑50 (MQ=255) gCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc > 1:219800/1‑50 (MQ=255) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTc < 1:1174213/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGGTGCGACGCTTGCCGCGTCt < 1:4023605/50‑1 (MQ=14) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:220630/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:3492911/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:692683/1‑49 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:3176824/1‑50 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:3311435/50‑1 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:3632336/50‑1 (MQ=255) ttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:2239403/1‑50 (MQ=255) ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:4156022/1‑50 (MQ=255) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:962389/49‑1 (MQ=12) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:2790475/1‑49 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:3280975/1‑49 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:588453/1‑49 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:282225/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:3285187/1‑50 (MQ=255) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:2540534/50‑1 (MQ=40) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:4336685/1‑50 (MQ=38) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:1715965/1‑50 (MQ=38) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:2301602/1‑50 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:372878/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:1341531/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:976176/50‑1 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:2567314/50‑1 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:33576/50‑1 (MQ=38) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg < 1:3051923/50‑1 (MQ=255) ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:742062/1‑50 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 1:542537/49‑1 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 1:2055454/49‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:841839/1‑48 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:1559989/50‑1 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:2740169/50‑1 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:1198836/50‑1 (MQ=255) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:3519918/50‑1 (MQ=38) cGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc < 1:278615/50‑1 (MQ=32) | GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |