| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G | . | 38.2% | 80.9 / 52.7 | 34 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base G (14/7); new base . (8/5); total (22/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCG > NC_000913/379966‑380058 | gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg > 1:83876/1‑50 (MQ=255)gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg < 1:3151284/49‑1 (MQ=255) gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggg < 1:1688467/50‑1 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg < 1:1283444/50‑1 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg > 1:3912341/1‑50 (MQ=255) aaaaTTTATCCGGTGAATGCGGTCGGAAAACAAAGAGGAAAggggggggg > 1:952075/1‑50 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggggc > 1:3851879/1‑49 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGc > 1:3908329/1‑50 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGc > 1:1575595/1‑50 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGc > 1:388686/1‑50 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGTGGAAAgggggggggct > 1:3326528/1‑47 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGc > 1:1961519/1‑49 (MQ=255) ttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTaa > 1:1099516/1‑50 (MQ=255) ttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAAt > 1:4349787/1‑50 (MQ=255) tATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAAt < 1:4197312/49‑1 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATc > 1:2319193/1‑50 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCg > 1:3435026/1‑50 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCgg > 1:2829208/1‑50 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCgg > 1:3890364/1‑49 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCgg > 1:2183148/1‑49 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCa < 1:1599367/50‑1 (MQ=255) ggTGAATGTGGTCGGAAAACAACGAGGAAAGGGGGGGGGGCTAATCgg > 1:3516620/1‑48 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAg > 1:3782421/1‑50 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAgg > 1:1434859/1‑49 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGaa < 1:3926570/50‑1 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAg < 1:3914930/50‑1 (MQ=255) gtgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAgg > 1:769280/1‑50 (MQ=255) gtgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAgg > 1:4080092/1‑50 (MQ=255) gtgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgc > 1:3635795/1‑50 (MQ=255) gtgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgc > 1:3911422/1‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgc < 1:2150205/50‑1 (MQ=255) gTCGGAAAACATAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGgccgc < 1:2673067/50‑1 (MQ=255) gTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgccg < 1:2317098/50‑1 (MQ=255) gTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGgccg > 1:2939603/1‑50 (MQ=255) ggAAAACAAAGAGGAAAGGGGGGGGGGTTAATCGGCAGGGAAGGcccccc > 1:4359798/1‑50 (MQ=255) gAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc < 1:685655/50‑1 (MQ=255) aaaaCAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg < 1:4168080/50‑1 (MQ=255) aaaaCAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg < 1:156589/50‑1 (MQ=255) aaaCAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCgg < 1:4176665/50‑1 (MQ=255) aCAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 1:4031215/1‑48 (MQ=255) cAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg > 1:1310213/1‑50 (MQ=255) gAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcg < 1:1586549/50‑1 (MQ=255) | GAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCG > NC_000913/379966‑380058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |