| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 96.3% | 205.6 / 1.1 | 54 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (25/27); total (25/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCG > NC_000913/3948751‑3948842 | tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑cc < 1:5694742/49‑1 (MQ=255)tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑cc < 1:4090091/49‑1 (MQ=255)tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑cc < 1:235139/49‑1 (MQ=255)tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑g > 1:2907/1‑50 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑g < 1:3022770/49‑1 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gg < 1:668832/49‑1 (MQ=255) cGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gggg > 1:667596/1‑50 (MQ=255) cGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑gggg > 1:2840080/1‑50 (MQ=255) ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg > 1:2534825/1‑50 (MQ=255) ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg < 1:5129604/50‑1 (MQ=255) gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg‑g < 1:4598384/50‑1 (MQ=255) tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg‑gg > 1:5347653/1‑49 (MQ=255) gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg‑ggt < 1:4195483/49‑3 (MQ=255) gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑ggggg‑ggt < 1:4947818/49‑3 (MQ=255) ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTa < 1:450033/50‑1 (MQ=255) tgctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTaa > 1:2126198/1‑50 (MQ=255) gctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAAt > 1:5296142/1‑50 (MQ=255) gctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAAt > 1:5027379/1‑50 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTaa < 1:5808015/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTaa < 1:2889518/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTaa < 1:2786045/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTaa < 1:5948775/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAAt < 1:4423391/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATg < 1:897549/50‑1 (MQ=255) ttCTCCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GAGGTAATgg > 1:3524092/1‑49 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATgg < 1:1241299/48‑1 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGa > 1:2364943/1‑50 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGa < 1:3300967/49‑1 (MQ=255) cccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAtct > 1:3038187/1‑50 (MQ=255) ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAtctc > 1:4700671/1‑50 (MQ=255) ccGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAt < 1:2202448/47‑1 (MQ=255) cGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAtctc > 1:3389287/1‑49 (MQ=255) cGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAtctc > 1:3604375/1‑49 (MQ=255) cGGCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTcc < 1:1276160/50‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGAtctc > 1:4441500/1‑48 (MQ=255) gCACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAg < 1:1034597/50‑1 (MQ=255) cACTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGt > 1:3038528/1‑50 (MQ=255) aCTACCGTTTTACTCAAAATGTCG‑GGGGG‑GTGGTAATGGGATCTCCAGTg < 1:4859833/50‑1 (MQ=255) aCTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGt > 1:6029405/1‑49 (MQ=255) aCTACCGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGt > 1:4951904/1‑49 (MQ=255) ccGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTgaga < 1:4768883/49‑1 (MQ=255) ccGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTgaga < 1:5866843/49‑1 (MQ=255) cGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTgagaga < 1:2773553/50‑1 (MQ=255) cGTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTga > 1:527004/1‑46 (MQ=255) gTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTga > 1:4809880/1‑45 (MQ=255) gTTTTACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGAt < 1:1691097/50‑1 (MQ=255) ttttACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATc < 1:5161572/50‑1 (MQ=255) ttttACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATc < 1:1144747/50‑1 (MQ=255) ttttACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATc < 1:1332170/50‑1 (MQ=255) ttttACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATc < 1:2613065/50‑1 (MQ=255) tttACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATc > 1:3235385/1‑49 (MQ=255) ttACTCAAAATG‑CC‑GGGGGTGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:3856094/49‑1 (MQ=255) tACTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCg > 1:3489088/1‑48 (MQ=255) aCTCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:976375/49‑1 (MQ=255) tCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg > 1:5685364/1‑50 (MQ=255) tCAAAATG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg > 1:4780861/1‑50 (MQ=255) aaaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg < 1:74195/49‑1 (MQ=255) aaaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:3502361/48‑1 (MQ=255) aaaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:4830068/48‑1 (MQ=255) aaaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:2307312/50‑1 (MQ=255) aaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:5593337/50‑1 (MQ=255) aaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:3164803/1‑50 (MQ=255) aaaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:2675096/1‑50 (MQ=255) aaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:5505234/1‑49 (MQ=255) aaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1389626/1‑49 (MQ=255) aaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:512847/1‑49 (MQ=255) aaTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCg < 1:2828596/50‑1 (MQ=255) aTG‑CCGGGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:555368/1‑48 (MQ=255) | TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATG‑CC‑GGGGG‑GTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCG > NC_000913/3948751‑3948842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |