| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,980,957 | (G)6→7 | coding (71/1386 nt) | yifK → | putative transporter YifK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,980,951 | 1 | . | G | 97.9% | 186.0 / ‑2.7 | 47 | coding (65/1386 nt) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (18/28); total (19/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 | ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:3660391/50‑1 (MQ=255)ccAGAGCTACAGCGTGGGCTGG‑AGCTCGACATATCGAACTCATCGCCCT‑g > 1:356379/1‑50 (MQ=38) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g < 1:1791375/50‑1 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg < 1:4328323/50‑1 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg < 1:4780741/50‑1 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gg < 1:5062004/50‑1 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gg < 1:2109598/50‑1 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gg < 1:4438405/50‑1 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggg < 1:2911877/50‑1 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggg < 1:1170539/50‑1 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggg > 1:4792671/1‑50 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑ggggg > 1:470551/1‑49 (MQ=255) aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑ggggg > 1:1636366/1‑48 (MQ=255) cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg‑gggggc < 1:2898910/49‑3 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAt < 1:4405100/50‑1 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAt > 1:2938950/1‑50 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAt > 1:1147411/1‑50 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAt > 1:3816467/1‑50 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCAtt < 1:476944/50‑1 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTg < 1:5897965/49‑1 (MQ=39) gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGc < 1:2783144/50‑1 (MQ=255) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCg < 1:5434231/50‑1 (MQ=255) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCg < 1:4566127/50‑1 (MQ=255) tGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGt > 1:4926963/1‑50 (MQ=255) tGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGt > 1:1905742/1‑50 (MQ=255) tGGAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGt > 1:4529898/1‑50 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGt < 1:933205/48‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTc < 1:1047769/49‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTc < 1:1099047/49‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCgg > 1:5222819/1‑50 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCgg < 1:917986/50‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCgg < 1:1083833/50‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCgg > 1:4116370/1‑50 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGcc > 1:3818477/1‑50 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGcc > 1:1579312/1‑50 (MQ=255) cTCGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCt > 1:52066/1‑50 (MQ=255) cGACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGt > 1:3627928/1‑50 (MQ=255) gACATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGtt < 1:4171502/50‑1 (MQ=255) aCATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGttt < 1:3724877/50‑1 (MQ=255) cATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTa < 1:5176434/50‑1 (MQ=255) cATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTa > 1:1242815/1‑50 (MQ=255) cATATCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTa < 1:1155908/50‑1 (MQ=255) atatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTAt < 1:1095453/50‑1 (MQ=255) atatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTAt > 1:5395832/1‑50 (MQ=255) tatCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATg < 1:5819192/50‑1 (MQ=255) atCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATgg > 1:380194/1‑50 (MQ=255) tCGAACTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATggg > 1:2695830/1‑50 (MQ=255) aCTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 1:3248566/50‑1 (MQ=255) aCTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:4395527/1‑50 (MQ=255) cTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg < 1:4107410/50‑1 (MQ=255) cTCATCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg < 1:4347142/50‑1 (MQ=255) cATCGCCCT‑GGTGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:3527411/1‑49 (MQ=38) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc < 1:935019/49‑1 (MQ=39) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:570152/50‑1 (MQ=255) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:2594350/50‑1 (MQ=255) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:2805380/50‑1 (MQ=255) aTCGCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:4120967/50‑1 (MQ=255) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:2055919/49‑1 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:5780600/49‑1 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:3680464/49‑1 (MQ=39) gCCCTGGG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa > 1:3209573/1‑50 (MQ=255) | CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GG‑GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |