| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 74 [0] | [0] 74 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 70 (0.900) | 41/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTC > 1:5072968/1‑50 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 1:1549434/50‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTAC > 1:2298417/1‑50 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC < 1:2671010/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCTACC > 1:1526181/1‑50 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTC > 1:2447031/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCTC > 1:1051001/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:2734121/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCTACCcc > 1:3051223/1‑47 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCCAT > 1:5164563/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGT > 1:3892168/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACCCTACCCCAATtt > 1:1357474/1‑48 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGAAGACTCTAACTCAATGT > 1:1274432/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:1493421/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:3979270/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:3710279/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:1119191/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:2149371/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCACCTCCATGTGTA > 1:1649779/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGAGCACCCTACCTCCAAGTGTA > 1:4056526/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGAGAACTCTACCTCCATGGGTA > 1:773488/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGATAACTCTACCCCCATGTGTAT > 1:4481209/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGAGCACCCTACCTCCATGTGGAT > 1:1925535/1‑50 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:5894981/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATTTGTATCA > 1:2088097/1‑50 ATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGTGTATCA > 1:2247120/1‑50 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:1116934/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:1678441/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGAGCACTCTACCCCCATGTGTATta > 1:4088130/1‑47 GCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATGTGTATCAC > 1:2000649/1‑49 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:5335387/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:1911511/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:1440881/50‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:634019/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:6024042/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:5795132/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:4707304/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:4784092/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:5235539/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:1777087/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:1324403/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:5060550/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:4212714/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:5476164/50‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:3794143/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:2351175/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:3600939/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:4867138/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:747204/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:774043/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:4683592/50‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:4402139/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:4703736/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:517013/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:4353719/1‑48 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:701417/1‑48 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:650972/1‑48 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG < 1:1321004/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG < 1:2711557/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:1900441/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:5918631/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:3451977/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2668341/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:3143126/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:4178090/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:4839392/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:5207880/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:3796079/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2450034/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2551239/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:5039144/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:3999254/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:5323805/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:4048260/1‑48 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |