| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 121 [0] | [0] 122 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 108 (1.520) | 62/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 130 total aligned reads displayed.
CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC > NC_000913/586109‑586156 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:2234179/1‑50CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:1867451/1‑50CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:5424357/1‑50 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:3918028/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT > 1:1958318/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:3743574/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:877862/48‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:5809152/48‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:4969389/48‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:3653161/1‑50 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC < 1:5947357/50‑1 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC < 1:1636946/50‑1 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:2930157/1‑49 GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:128280/50‑1 GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:2495393/50‑1 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:4922867/50‑1 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:106547/50‑1 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:1678735/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:1916748/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT < 1:3823069/50‑1 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:3693460/1‑50 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTT < 1:5425629/50‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTT < 1:5500152/50‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:4327505/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:2062756/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:2105302/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:1379897/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:689368/1‑49 GCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA < 1:3175855/50‑1 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT < 1:3880800/50‑1 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT < 1:4101755/50‑1 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:6010512/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:3784952/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG < 1:981539/48‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:2896272/49‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:1576915/49‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT < 1:679627/50‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:5217083/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:42764/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC < 1:3406166/50‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:3222451/50‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:2433525/50‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:3038505/1‑49 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:3072970/1‑50 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:199251/1‑50 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:4707517/1‑50 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:2748549/50‑1 GTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:5151494/1‑50 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:1289825/50‑1 GTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:1643268/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:3921156/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:2733042/49‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:4916578/49‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:1118752/49‑1 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:5593766/1‑50 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT > 1:929813/1‑50 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:5828206/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC > 1:4385947/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC > 1:2739452/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT < 1:2894525/47‑1 GGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCC > 1:4860288/1‑50 GGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCC > 1:1565274/1‑50 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:4240724/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:499550/50‑1 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC > 1:954387/1‑50 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:1887086/1‑50 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:1419986/1‑50 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:3353029/1‑50 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:2584135/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:2620701/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:5920382/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:2730077/50‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC > 1:4023820/1‑50 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC > 1:1124345/1‑50 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:6004371/49‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:875109/49‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC < 1:5929025/50‑1 AACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCC < 1:5583826/50‑1 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCT > 1:5724245/1‑50 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:836462/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:2609974/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:5553755/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:1089348/1‑49 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:2401727/1‑49 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA < 1:3909797/50‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA > 1:1914227/1‑50 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA < 1:4665531/50‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA < 1:2234786/50‑1 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:3978284/1‑50 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:5320721/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:4429622/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:443238/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:3953297/1‑49 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:4130369/1‑50 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:5365052/1‑49 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC < 1:4071450/49‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC < 1:4006175/49‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC < 1:1954971/49‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:3730278/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:3415216/48‑1 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC > NC_000913/586109‑586156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |