| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 101 [0] | [0] 96 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 95 (1.220) | 59/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 101 total aligned reads displayed.
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:905785/1‑50ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:5073843/1‑50 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTC < 1:4081508/50‑1 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:847502/1‑49 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:329315/49‑1 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:3716566/1‑49 TTTACTTTGGTTCGTCGGCATTTTGGTGATGTGTTCGCTCTCCACCCTT > 1:3400224/1‑49 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 1:2510150/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:4954388/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:946129/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:4835549/49‑1 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:2041027/1‑49 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:4107844/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:2653818/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:5330182/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:5870708/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:3182948/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:5228287/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:200902/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:1484207/49‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC < 1:5714988/50‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:3820412/49‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:5966663/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:3691409/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG < 1:2276318/50‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:5779917/49‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:1491154/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:3865770/50‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:906638/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:1463867/49‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:3917132/49‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:4615775/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:5170851/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:5271370/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:5981194/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:1140521/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:1939339/50‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:4181864/49‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:4806081/49‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:1553902/1‑49 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:2397246/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:3662972/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:28468/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:875206/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:825969/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:1271618/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:2967250/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA < 1:5768657/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:811630/50‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:4323793/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:2541302/1‑49 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:3960063/49‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:2994672/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:4967908/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:1029857/49‑1 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:2186622/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:743380/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:1698692/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 1:1666338/1‑49 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:5998594/49‑1 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:1873425/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:2662882/1‑50 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:55869/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG < 1:4996546/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:3251982/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:2232292/50‑1 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:3386321/1‑47 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:710903/1‑47 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:2479199/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:5206739/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:3345513/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:2901707/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC < 1:431934/50‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:908778/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:4558788/49‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:3752687/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:1124047/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:2117973/50‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:517890/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:1778620/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:1887505/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:1571937/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:4689898/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:3424383/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:3732534/1‑50 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCC < 1:5492883/50‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCC < 1:2594687/50‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:5509677/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:832993/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:1138229/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:2603726/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT < 1:5605781/47‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:851486/1‑50 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:2938764/1‑50 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:5745745/1‑50 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 1:4514403/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:1312492/1‑49 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:443396/1‑50 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:3158055/1‑50 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:1411141/1‑50 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |