| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 129 [0] | [0] 128 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 127 (1.600) | 67/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 127 total aligned reads displayed.
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:100182/1‑50CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:4515284/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:2224875/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:5079297/49‑1 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:230233/1‑49 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:2314511/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:4190794/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:132335/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:377798/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1423124/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:3171591/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:687166/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:2537592/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:2146140/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:5498177/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:5956153/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:2508341/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:4473628/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:5304595/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:3332604/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2955845/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:3548724/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:3651913/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:278925/50‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1764185/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1376279/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4549921/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2303348/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG < 1:1827540/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2500724/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:4872438/1‑48 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2554720/1‑48 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:5036186/1‑48 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:1463498/1‑50 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:205232/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:395636/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:4679184/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:4976675/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:4227135/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:30134/49‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2427441/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2106475/1‑49 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:2115678/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:5009000/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:2323107/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:4690952/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5849835/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:4318854/48‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:4762852/48‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:1761373/48‑1 TATTTATAACAACATCAAAGAATACTAACAATGCCGGACAGGAGTACTA < 1:5739206/49‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:757291/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:1032250/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:5283515/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:4134441/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:168683/1‑48 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:3731709/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:1032706/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:2941768/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:3397549/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:2760789/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:318275/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:845642/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:2881096/50‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:4450183/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:2106216/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:4622037/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:1635256/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:4530710/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:1766419/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3311323/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3655759/1‑50 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:3079299/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:1594667/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:4159846/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:2214958/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:4912106/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:5668581/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3667009/1‑49 AATTAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3157675/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:2444580/49‑1 AATGAATACTAACAATGCCGGACAGGAGAACTATCAGCCATTCGTTTTA > 1:4984050/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:2060522/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:3204252/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:1460863/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:2173948/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:3837606/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:4221138/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:4777240/49‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:1616039/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:4479550/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:5072363/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2845857/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:5893444/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:951120/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:2880503/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:858579/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:5791088/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:4232004/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1911/49‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |