| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 148 [0] | [0] 147 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 137 (1.840) | 65/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 157 total aligned reads displayed.
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:4993030/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:4843976/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:2961766/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 1:1730569/1‑50 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:1207420/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:623601/1‑49 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:2520842/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:4980629/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:5392649/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:2656751/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:4151044/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:1566043/49‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:3002328/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:1469128/50‑1 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:665874/1‑50 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:4823202/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:3881543/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:3420642/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:5593138/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:145271/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT < 1:4330564/50‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC < 1:5672368/48‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC < 1:3678918/48‑1 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:136747/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:4345965/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:5146456/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:2224322/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:4517165/1‑50 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:3616/1‑50 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:4908899/1‑50 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:3924372/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:5279004/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:1695198/49‑1 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:3103827/1‑49 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:2748098/1‑49 GCTCACGCGCGGCGATATAGAATTCAAACGTTATAATCCCTTGTGACGT > 1:3345808/1‑49 GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:700931/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:1953875/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:4713071/47‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:4786883/47‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:5558705/47‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:960002/1‑49 CACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:1484508/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:2429246/1‑50 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:5916357/1‑50 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC < 1:1646981/50‑1 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:228618/1‑50 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:1906497/50‑1 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA < 1:897345/50‑1 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:2765524/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:4903924/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:10030/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:2282942/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:1542206/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1106245/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:2342118/50‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:2000824/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:4216586/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:529670/50‑1 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:2454833/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:5609738/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:5986541/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:4938276/49‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:2639943/49‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:5534605/1‑48 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:1082811/1‑50 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:5439926/1‑50 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:1610512/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:4647100/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:1203767/50‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:3901619/1‑50 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:576097/1‑50 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:5713164/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:3607845/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:3868772/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:3166626/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:5829181/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:3697797/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:1298559/1‑49 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:2853453/1‑50 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:4233275/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:297909/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:5971486/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG < 1:2819142/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:3068259/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:570686/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:2915970/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:3800763/49‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3426427/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1625496/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3411368/1‑49 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:4425669/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:1007366/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:2355880/1‑48 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1901953/1‑48 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 1:5173918/50‑1 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:2988946/1‑50 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:5511888/1‑49 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA < 1:5945311/50‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > 1:904767/1‑49 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |